| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121999027
Identifier: 121999027
GI number: 121999027
Start: 2469131
End: 2469874
Strand: Reverse
Name: 121999027
Synonym: Hhal_2248
Alternate gene names: NA
Gene position: 2469874-2469131 (Counterclockwise)
Preceding gene: 121999028
Following gene: 121999026
Centisome position: 92.21
GC content: 71.1
Gene sequence:
>744_bases ATGTTTCAGGCGCCCGTATCCCGGTTGGCGACAGCGTCCGTCCTGCTTGCAGCCTGCGGGGCTGCGGCGGCCGCGCTGGC CGGCCCGTTGTACCGTATCCATACCGTCGAACTCGATTCGGCCCTGATGATGATCGCCGCCGGTTTCGTCGCCGGGGCCC TCGCCCTCATCCCCGGTGGGGTCGGGCTGGTCGCCACCTTCGGTCTGCACGGCAAGCGGGGGCGGGGTCGGGCCCTGGCT GGACTGGCTCTGGGGCTGGGAGTGGTGGTGGTCGCCGGGCCGAAGGTCTATGGCGCCGTCCTCGGGCCGAACCTCCACGA CCTCGTCACCACCGAAGACGACCCGCCGTCATTCCGTGCCCTGGCACCGGCCCGTGAACGCGCCGGCAGCGCCGTGGACT ATCCCGGCGGGGCGGTGGCCGAGCGCCAGGCCGAAGCGCACCCCGAGCTCACCGGTCGGGACTACCCCCACGACGTCTCC GAGATCCTTAGTGCCGCCGAGAGCGCCGCGCTGGGCCTGGAGTGGACGGTGGCGCGCACCGACATGCAGGGCGAGCTGGA GGCCACAGCGCGCAGCTACTGGCTGGGCATCGTCCACGACATCGTCATCCGGGTCGAGGATGACGGGGATCATCGTCGGG TCGATGCGCGCGCGGCCACGCGCGGCGGCGAGGCGGATGTCGGTGATAACGCACGCCTGGTCAGCGACTTCTACGAGGAG CTCGAGGCGCAGCTGGAACGCTGA
Upstream 100 bases:
>100_bases GCGGCGTCCGCTTGGGCGCTGCCCCGCCCTCGTCGCCTGGAACGTTTTGCCTCGGCCGTCTCCGGCCGCATAATTGGCCG GAAATCCGGCAGGAGGGGTC
Downstream 100 bases:
>100_bases GCGGGGCGGCGTACGGCGGATGATCAGGCTGACTTGGATGCGTTACTATCGCGGCTTATCCGCGGATCGCGAAGCTGAAT AGGGAGACTTCCATGAGCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 247; Mature: 247
Protein sequence:
>247_residues MFQAPVSRLATASVLLAACGAAAAALAGPLYRIHTVELDSALMMIAAGFVAGALALIPGGVGLVATFGLHGKRGRGRALA GLALGLGVVVVAGPKVYGAVLGPNLHDLVTTEDDPPSFRALAPARERAGSAVDYPGGAVAERQAEAHPELTGRDYPHDVS EILSAAESAALGLEWTVARTDMQGELEATARSYWLGIVHDIVIRVEDDGDHRRVDARAATRGGEADVGDNARLVSDFYEE LEAQLER
Sequences:
>Translated_247_residues MFQAPVSRLATASVLLAACGAAAAALAGPLYRIHTVELDSALMMIAAGFVAGALALIPGGVGLVATFGLHGKRGRGRALA GLALGLGVVVVAGPKVYGAVLGPNLHDLVTTEDDPPSFRALAPARERAGSAVDYPGGAVAERQAEAHPELTGRDYPHDVS EILSAAESAALGLEWTVARTDMQGELEATARSYWLGIVHDIVIRVEDDGDHRRVDARAATRGGEADVGDNARLVSDFYEE LEAQLER >Mature_247_residues MFQAPVSRLATASVLLAACGAAAAALAGPLYRIHTVELDSALMMIAAGFVAGALALIPGGVGLVATFGLHGKRGRGRALA GLALGLGVVVVAGPKVYGAVLGPNLHDLVTTEDDPPSFRALAPARERAGSAVDYPGGAVAERQAEAHPELTGRDYPHDVS EILSAAESAALGLEWTVARTDMQGELEATARSYWLGIVHDIVIRVEDDGDHRRVDARAATRGGEADVGDNARLVSDFYEE LEAQLER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25681; Mature: 25681
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFQAPVSRLATASVLLAACGAAAAALAGPLYRIHTVELDSALMMIAAGFVAGALALIPGG CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCC VGLVATFGLHGKRGRGRALAGLALGLGVVVVAGPKVYGAVLGPNLHDLVTTEDDPPSFRA HHHHHHHCCCCCCCCCHHHHHHHHHHCEEEEECCHHEEHHCCCCHHHCEECCCCCCCHHH LAPARERAGSAVDYPGGAVAERQAEAHPELTGRDYPHDVSEILSAAESAALGLEWTVART CCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEC DMQGELEATARSYWLGIVHDIVIRVEDDGDHRRVDARAATRGGEADVGDNARLVSDFYEE CCCCHHHHHHHHHHHHHHEEEEEEECCCCCCEEECHHHHCCCCCCCCCCCHHHHHHHHHH LEAQLER HHHHHCC >Mature Secondary Structure MFQAPVSRLATASVLLAACGAAAAALAGPLYRIHTVELDSALMMIAAGFVAGALALIPGG CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCC VGLVATFGLHGKRGRGRALAGLALGLGVVVVAGPKVYGAVLGPNLHDLVTTEDDPPSFRA HHHHHHHCCCCCCCCCHHHHHHHHHHCEEEEECCHHEEHHCCCCHHHCEECCCCCCCHHH LAPARERAGSAVDYPGGAVAERQAEAHPELTGRDYPHDVSEILSAAESAALGLEWTVART CCCHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEEC DMQGELEATARSYWLGIVHDIVIRVEDDGDHRRVDARAATRGGEADVGDNARLVSDFYEE CCCCHHHHHHHHHHHHHHEEEEEEECCCCCCEEECHHHHCCCCCCCCCCCHHHHHHHHHH LEAQLER HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA