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The map label for this gene is sspB [H]

Identifier: 121998884

GI number: 121998884

Start: 2310651

End: 2311079

Strand: Reverse

Name: sspB [H]

Synonym: Hhal_2105

Alternate gene names: 121998884

Gene position: 2311079-2310651 (Counterclockwise)

Preceding gene: 121998885

Following gene: 121998880

Centisome position: 86.28

GC content: 66.2

Gene sequence:

>429_bases
ATGACCCCGAGTCGTCCCTACCTCATCCGGGCGATCTACGAGTGGATCGCCGATAACGGTTACACCCCCTATCTGCTGGT
GGATGCCAGTCGGGAGGATGTCGACGCCCCGCTGGAATACGCCGAGGACGGCCGACTGGTGCTGAATGTGGCACCGCGGG
CGGTCCAGGGGCTGAACATGGGCAACGACGAGATCGTCTTCCGTGCCCGTTTCGGTGGTGTGCCGCGCGGTGTTCAGGTG
CCGGTGAACGCGGTCATGGCCATCTATGCCCGGGAGAACGGGCAGGGCATGCTCTTCGGTGAGGGCGATGACGCCGAGTC
GGAGGAGTACGAGGCCCTGGACGCGGGGCAGGACAGTGACGATGACCACGACGGGCCGCCGGACGGCCCCAGCGGGGGCA
AGCGGCCCAATCTGCGCGTGGTCAAATAG

Upstream 100 bases:

>100_bases
TCACTCAGTACGCCGAACAGCAGTTTGCAACCGACGCCTTCCGCATCAGTCTGACCCGCGAGGAGCAGGCCCTGCGTGCG
TGAAGGCAGGAGGCGCACCA

Downstream 100 bases:

>100_bases
ACGGTTGCCCCGAGGGCGGCGCTAGCCGCCCGGGCCACCGAACAGGGTGCGATCGATCAGGTCGCACAGGCAGTGGATCA
CCAGCAGGTGGACCTCCTGA

Product: ClpXP protease specificity-enhancing factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTPSRPYLIRAIYEWIADNGYTPYLLVDASREDVDAPLEYAEDGRLVLNVAPRAVQGLNMGNDEIVFRARFGGVPRGVQV
PVNAVMAIYARENGQGMLFGEGDDAESEEYEALDAGQDSDDDHDGPPDGPSGGKRPNLRVVK

Sequences:

>Translated_142_residues
MTPSRPYLIRAIYEWIADNGYTPYLLVDASREDVDAPLEYAEDGRLVLNVAPRAVQGLNMGNDEIVFRARFGGVPRGVQV
PVNAVMAIYARENGQGMLFGEGDDAESEEYEALDAGQDSDDDHDGPPDGPSGGKRPNLRVVK
>Mature_141_residues
TPSRPYLIRAIYEWIADNGYTPYLLVDASREDVDAPLEYAEDGRLVLNVAPRAVQGLNMGNDEIVFRARFGGVPRGVQVP
VNAVMAIYARENGQGMLFGEGDDAESEEYEALDAGQDSDDDHDGPPDGPSGGKRPNLRVVK

Specific function: Seems to act in concert with sspA in the regulation of several proteins during exponential and stationary-phase growth. The exact function of sspB is not yet known [H]

COG id: COG2969

COG function: function code R; Stringent starvation protein B

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789623, Length=123, Percent_Identity=52.8455284552846, Blast_Score=134, Evalue=2e-33,

Paralogues:

None

Copy number: 297 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007481 [H]

Pfam domain/function: PF04386 SspB [H]

EC number: NA

Molecular weight: Translated: 15482; Mature: 15351

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPSRPYLIRAIYEWIADNGYTPYLLVDASREDVDAPLEYAEDGRLVLNVAPRAVQGLNM
CCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCC
GNDEIVFRARFGGVPRGVQVPVNAVMAIYARENGQGMLFGEGDDAESEEYEALDAGQDSD
CCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCCC
DDHDGPPDGPSGGKRPNLRVVK
CCCCCCCCCCCCCCCCCEEEEC
>Mature Secondary Structure 
TPSRPYLIRAIYEWIADNGYTPYLLVDASREDVDAPLEYAEDGRLVLNVAPRAVQGLNM
CCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEECCCHHHCCCC
GNDEIVFRARFGGVPRGVQVPVNAVMAIYARENGQGMLFGEGDDAESEEYEALDAGQDSD
CCCEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCEEEEECCCCCCCCCHHHHCCCCCCC
DDHDGPPDGPSGGKRPNLRVVK
CCCCCCCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]