| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998665
Identifier: 121998665
GI number: 121998665
Start: 2071440
End: 2072741
Strand: Reverse
Name: 121998665
Synonym: Hhal_1886
Alternate gene names: NA
Gene position: 2072741-2071440 (Counterclockwise)
Preceding gene: 121998666
Following gene: 121998664
Centisome position: 77.39
GC content: 63.9
Gene sequence:
>1302_bases ATGAGTCGACTCTTCGCCGGGCGGAGCGGGTGCAGCAGCCGCGTCGTGCAATCCGCCGTCGCTGTCGTGGCGATGGTCGG GATCGCCACCGAGGCAAGCGCCATGAGCCGCTCCAATAATGTCGGCATGCATGTCGGCGACCGGCCCATGGGGATGGGCG GCGCGGCGGCGGGGATCTCGGACGATCCCTCCGGTCTCTACTACAACCCCGCCGGCATCGTCTACGGCCACGCCCCGAAC CTTTCGGCGAGCGTCAACGCGTTCCACATCACCAGCAATCGCTATGCCGATACGCTTGGCGAGGGCTCGGACTGGGAACG GAACTCCGATGAGTTCCTGCCCAACTTCTTCGGTACCACCCAGCCCCTAGGCCCCGTCACGGTGGGCTTTTCTGTCGTCG TCCCGCAGTCCGTTCGTGAGGAGCAGGCTCAGACCTTCGATGCGGATGCCATCGAACGCGATGCGGTGCAGGCGTTTTCC ATCAATGTGGACAATGAAGACACCATCAACCGCTTGGGGCCGTCCATCGCCTTTGAGGTGAACGATCGGCTTTCACTGGG CGCGTCCCTTCATCTCCACCAGCACGAGCGGCAGACCATTACCACCCAGGTGCTCCTGCTCGAGGACGAAGCCACTAGTG CCCGGGACTACGAGGTGCAGAACCAGTACGTCACCAGCGAGCAGGTTGGAGTGAGTTGGCTGGTGGGAGCGATGTTCACC CCGCTGGAGCGCGTGGCGATTGGGGTCAGCGTCCGGGGTACGGAGATCTTCGATGCGACCAACTCCACCCAGACGCTCTG CCACGGGGCCGATGTTGAGGCGTACGAGGCCGATCACTTCTGCCAATCCGGCAGCGTGACCTTCCAGGATCGTACTGAGG ATAGCGTGCGCGAGGCGTACCCGGTCGAGACCCGCGTCGGCGCTGCCTGGTTCGCGACGCAGCGTCTGCTCCTCGCCGCC GATGTGATCCACTCCAGCGGCTTCGGGGGACGAGAGCCGGTCACCAATTTCGCGGCCGGTGCCGAGTACTACCTAACGGC AGACTGGGCCATCCGGCTTGGCGGGTTCACGGACTTCTCCAATGTCGACGAGGTCGCCTACGACGGCTTTGACCATAGCG TTGATCGATTCGGTGGCTCCCTGAGCCTGACCCGGTTTACCCAGAACACGTCCGTCTCCGTGGGCGTGACCGGCAGCTAC GGCACCGGTGAGGCCTACATTATCGACGACCCCAACGTCGGTGCCCAGGACCTGACCAGCACCACCGCAACCCTGTTCCT GGCGACGTCGTACTCCTACTAG
Upstream 100 bases:
>100_bases TGGATGAACGGCTTCAAGCACTGGAGGGCTTCATGGTGGAGATGGGGCTGGCTGACGCGGAGCGACCGCGCATGGGCGAC CGATTCCAGGAGAACATGCA
Downstream 100 bases:
>100_bases CCGGAAGCCACAGCGTTCGCGAACTCATCAAGGATGGACAAAGCATGGCCATGCGATTCACAAGCACACCCCCGATGATC GATTCGGTGCGCGGAATGCC
Product: aromatic hydrocarbon degradation membrane protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 433; Mature: 432
Protein sequence:
>433_residues MSRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGISDDPSGLYYNPAGIVYGHAPN LSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTTQPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFS INVDNEDTINRLGPSIAFEVNDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAYPVETRVGAAWFATQRLLLAA DVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFSNVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSY GTGEAYIIDDPNVGAQDLTSTTATLFLATSYSY
Sequences:
>Translated_433_residues MSRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGISDDPSGLYYNPAGIVYGHAPN LSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTTQPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFS INVDNEDTINRLGPSIAFEVNDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAYPVETRVGAAWFATQRLLLAA DVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFSNVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSY GTGEAYIIDDPNVGAQDLTSTTATLFLATSYSY >Mature_432_residues SRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGISDDPSGLYYNPAGIVYGHAPNL SASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTTQPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFSI NVDNEDTINRLGPSIAFEVNDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFTP LERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAYPVETRVGAAWFATQRLLLAAD VIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFSNVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSYG TGEAYIIDDPNVGAQDLTSTTATLFLATSYSY
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 46405; Mature: 46274
Theoretical pI: Translated: 4.20; Mature: 4.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGIS CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCC DDPSGLYYNPAGIVYGHAPNLSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTT CCCCCEEECCCEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHCCHHHCCCC QPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFSINVDNEDTINRLGPSIAFEV CCCCCEEECEEEECCHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCHHHHHCCCEEEEEE NDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT CCCEECCEEEEEEHHCCCEEEEEEEEEECCCCCCCCEECCCCEECHHHCCHHHHHHHHHC PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAY CHHHHEEEEEECCCEEEECCCCCCCEEECCCCCEECHHHHHCCCCEEECCCCCHHHHHCC PVETRVGAAWFATQRLLLAADVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFS CCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCCCC NVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSYGTGEAYIIDDPNVGAQDLTS CCHHHHHCCCCHHHHHCCCCEEEEEEECCCEEEEEEECCCCCCCEEEEECCCCCHHHHHH TTATLFLATSYSY CEEEEEEEEECCC >Mature Secondary Structure SRLFAGRSGCSSRVVQSAVAVVAMVGIATEASAMSRSNNVGMHVGDRPMGMGGAAAGIS CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCC DDPSGLYYNPAGIVYGHAPNLSASVNAFHITSNRYADTLGEGSDWERNSDEFLPNFFGTT CCCCCEEECCCEEEEECCCCCCCCEEEEEEECCCHHHHCCCCCCCCCCCHHCCHHHCCCC QPLGPVTVGFSVVVPQSVREEQAQTFDADAIERDAVQAFSINVDNEDTINRLGPSIAFEV CCCCCEEECEEEECCHHHHHHHHHHCCCHHHHHCCEEEEEEECCCCHHHHHCCCEEEEEE NDRLSLGASLHLHQHERQTITTQVLLLEDEATSARDYEVQNQYVTSEQVGVSWLVGAMFT CCCEECCEEEEEEHHCCCEEEEEEEEEECCCCCCCCEECCCCEECHHHCCHHHHHHHHHC PLERVAIGVSVRGTEIFDATNSTQTLCHGADVEAYEADHFCQSGSVTFQDRTEDSVREAY CHHHHEEEEEECCCEEEECCCCCCCEEECCCCCEECHHHHHCCCCEEECCCCCHHHHHCC PVETRVGAAWFATQRLLLAADVIHSSGFGGREPVTNFAAGAEYYLTADWAIRLGGFTDFS CCCHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCEEEEEEEEEEEECCCCCCC NVDEVAYDGFDHSVDRFGGSLSLTRFTQNTSVSVGVTGSYGTGEAYIIDDPNVGAQDLTS CCHHHHHCCCCHHHHHCCCCEEEEEEECCCEEEEEEECCCCCCCEEEEECCCCCHHHHHH TTATLFLATSYSY CEEEEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA