| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998631
Identifier: 121998631
GI number: 121998631
Start: 2024066
End: 2025421
Strand: Reverse
Name: 121998631
Synonym: Hhal_1852
Alternate gene names: NA
Gene position: 2025421-2024066 (Counterclockwise)
Preceding gene: 121998640
Following gene: 121998629
Centisome position: 75.62
GC content: 67.11
Gene sequence:
>1356_bases ATGCAGAGAAAGCCAGCCAGCATGACCCTGAACGTAACGGAAAGGCATCAGGCCAGTGAGCCCGTCCTGGGCGCGTATAA CGATCACCCCCTGCGCCTGGAGGTCAACGACGAGATCCACGCCCGTCCCTACGAGCGGCTGCGGGCGCCGGCGCGGGTCA GCCACCTGGGGATGTTCTCCGGGCGCCACTCCGCCGATGCCGATCGGGCGGCAGTGGCCGATCTCTGCGAGCGCTTCGGG GTGGAGCCGCCGGAGCCGGATGCCCAGCACATGTCCCGCGACTTCGGGCCCTTCCGACTGAAGTGGGAGCGGCGCACCGA GGTCTCGACCTACACCTTCATCGTCGAAGACGACTTCGAGCACCCCTTCGAAGGGCCGCCGATCGAGCGGGTGCCCGAGG ATTGGCTGGCCAGTCTGCCCGGGCCGCGGCTGGTGGGTATCCACCTCGCCCTGGAACCGTCCTGGTCGCAGCCACGGACC AGCAGCGGGATCGTGGCGCTGTTCAACGACAACACCATCGTCGGCAGCCAGATCGCCGGCGGCGCAGCGCGGGTCTGGAC CGACTTCCGAATCCACGAAGACGGTTTCTCGCGCATCCTTCTGCGCGATGTGAACATGCGCGAGCGCCAGGCGGGCCGTG CCATCCAGCGCCTGCTGGAGATCGAGACCTATCGCATGATGGCGCTGCTCGCCTTTCCCGTGGCGCGACGCCTCAACCCG CAGCTCAATGAGCTCGAGGAGCAGCTCGCGAGCATTACCGAGCGCATGACCGGTTCAACCCGGGAGCGTGACGAGCAGAA CCTGCTCAGCCAGCTGATGGAGCTGGCCGCGCAGGTTGAGCGTATCGGCAACAACACCAACTACCGGTTTCACGCCGCGC GCGCCTACCACGAGCTGGTCGAGCGGCGCATTCAGGAGCTGCGCGAGCAGCGTATCCAGGGGGTGCAGACCATCCAGGAG TTTATGGAGCGCCGCCTGGTTCCGGCCATGCGTACCTGCGATACGGTGGCCGAGCGGCGAGGGTCGCTCTCCGAGCGCAT CTCGCGCACCGGCGACCTACTGCGCACCCGGATCGACGTCGCCCTGGAGGCGCAGAACCGGGATCTGCTCGACTCCATGG ATCGCCGCGCTAAGCTGCAGTTTCGCTTGCAGGAGACCGTCGAGGGGCTCTCCGTGGCGGCCATCAGTTACTACCTGATG GGCCTGATCAGCTATGTGTTGCAGGCGGCGCGGGACGCCGGCGCGCCCGTCCGCGTGGAGATCACCCAGGGCCTGGCGGT GCCGGTGGTGGTCTTCACCATCTGGTTGGTGGTGCGCTTGGTGCGCTACCGCATCGCCAAGCGCCAGGAGGGGTAG
Upstream 100 bases:
>100_bases CCGCCCAGGATGAGCTCCCGCATGCTGTTCCCCCTGGCAAGGGCCCGGCACAATAACATACCCTTGCGGCTGCCCGGTTC AACCCGGGGTCGCCCGCCCG
Downstream 100 bases:
>100_bases CGCCGCGCCGGCCGGCGCGGCGCCAGTCGCGGATCAGTCCTCCGTCCGGTCGGTGGCCGTGTCGGTGTGGGTTTCGCTGG TGTGCCAGTCCGACTCGACC
Product: membrane anchored protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 451; Mature: 451
Protein sequence:
>451_residues MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFSGRHSADADRAAVADLCERFG VEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFEHPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRT SSGIVALFNDNTIVGSQIAGGAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELVERRIQELREQRIQGVQTIQE FMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDVALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLM GLISYVLQAARDAGAPVRVEITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG
Sequences:
>Translated_451_residues MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFSGRHSADADRAAVADLCERFG VEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFEHPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRT SSGIVALFNDNTIVGSQIAGGAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELVERRIQELREQRIQGVQTIQE FMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDVALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLM GLISYVLQAARDAGAPVRVEITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG >Mature_451_residues MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFSGRHSADADRAAVADLCERFG VEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFEHPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRT SSGIVALFNDNTIVGSQIAGGAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELVERRIQELREQRIQGVQTIQE FMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDVALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLM GLISYVLQAARDAGAPVRVEITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG
Specific function: Unknown
COG id: COG4949
COG function: function code S; Uncharacterized membrane-anchored protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51665; Mature: 51665
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFS CCCCCCCEEEEEHHHHCCCCCCEECCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHCC GRHSADADRAAVADLCERFGVEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFE CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCC HPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRTSSGIVALFNDNTIVGSQIAG CCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEECCCCCC GAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP CHHHHHEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELV CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH ERRIQELREQRIQGVQTIQEFMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLMGLISYVLQAARDAGAPVRVE HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE ITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MQRKPASMTLNVTERHQASEPVLGAYNDHPLRLEVNDEIHARPYERLRAPARVSHLGMFS CCCCCCCEEEEEHHHHCCCCCCEECCCCCCEEEEECCCCCCCCHHHHCCCHHHHHHHHCC GRHSADADRAAVADLCERFGVEPPEPDAQHMSRDFGPFRLKWERRTEVSTYTFIVEDDFE CCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEEECCCCCCEEEEEEEECCCC HPFEGPPIERVPEDWLASLPGPRLVGIHLALEPSWSQPRTSSGIVALFNDNTIVGSQIAG CCCCCCCCCCCCHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEECCCCCC GAARVWTDFRIHEDGFSRILLRDVNMRERQAGRAIQRLLEIETYRMMALLAFPVARRLNP CHHHHHEEEEECCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QLNELEEQLASITERMTGSTRERDEQNLLSQLMELAAQVERIGNNTNYRFHAARAYHELV CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHH ERRIQELREQRIQGVQTIQEFMERRLVPAMRTCDTVAERRGSLSERISRTGDLLRTRIDV HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH ALEAQNRDLLDSMDRRAKLQFRLQETVEGLSVAAISYYLMGLISYVLQAARDAGAPVRVE HEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEE ITQGLAVPVVVFTIWLVVRLVRYRIAKRQEG ECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA