| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998604
Identifier: 121998604
GI number: 121998604
Start: 1997606
End: 1998055
Strand: Reverse
Name: 121998604
Synonym: Hhal_1825
Alternate gene names: NA
Gene position: 1998055-1997606 (Counterclockwise)
Preceding gene: 121998609
Following gene: 121998603
Centisome position: 74.6
GC content: 70.44
Gene sequence:
>450_bases ATGCCTCGCCACTCAGGATTCACACTCCTCGAGGCGCTTGTGGCCCTCGGGCTCTTGGCCGGTGTCGCGGCCGTGTCGCT CCTCGCCCTGTACGGCGGGGTGCACGGGGCTCGTGATGCCGGTTATCACGTCCGGGCGACCCTCCTTGCCGAAGAGTTGA TCGCCCGTGCCCGGCTGGTCGCCCCGGATCAGCGCGCCGCTGCCTTGGCCGCGGTCGATGCGGGTGATATCGACGCGTGC CAACCGCCGTCGGTCAAGGATCAGCCCCGTGGCGATGTGGTCGATGCCGACGGCTGGCGGGCCGAGGTGGCCTGCCAGCT GCCGCAGGCCGAGGTGTCGGCCGAGGCGGCCGCCGATCGCATCCGCGTCGAGCTCCGCTGGCAAGCCCCCCACCGCGACG CGCCATCGTCCCTTGAGCTTTCCGGGCAACTCCCTGAGGTCAATCGATGA
Upstream 100 bases:
>100_bases CCCCGTGCGTCATCGGGCCGCGGTGGCGTGCCCGGCATCCTGCGCTAGCCTTCGAGGGTGCGCATGGAAAGTGCGGATGG AACCCATACGCGAGGAAGGG
Downstream 100 bases:
>100_bases TCCGGCGCATGGGTGGTGTGACGCTGGTCGAGCTGCTCGTGGCGCTCGGGGTGGCATCGGTGGCGTTGCTCGCCGCGGTG CAGCTCCTCGGCAGTGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 149; Mature: 148
Protein sequence:
>149_residues MPRHSGFTLLEALVALGLLAGVAAVSLLALYGGVHGARDAGYHVRATLLAEELIARARLVAPDQRAAALAAVDAGDIDAC QPPSVKDQPRGDVVDADGWRAEVACQLPQAEVSAEAAADRIRVELRWQAPHRDAPSSLELSGQLPEVNR
Sequences:
>Translated_149_residues MPRHSGFTLLEALVALGLLAGVAAVSLLALYGGVHGARDAGYHVRATLLAEELIARARLVAPDQRAAALAAVDAGDIDAC QPPSVKDQPRGDVVDADGWRAEVACQLPQAEVSAEAAADRIRVELRWQAPHRDAPSSLELSGQLPEVNR >Mature_148_residues PRHSGFTLLEALVALGLLAGVAAVSLLALYGGVHGARDAGYHVRATLLAEELIARARLVAPDQRAAALAAVDAGDIDACQ PPSVKDQPRGDVVDADGWRAEVACQLPQAEVSAEAAADRIRVELRWQAPHRDAPSSLELSGQLPEVNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15671; Mature: 15540
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00409 PROKAR_NTER_METHYL
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRHSGFTLLEALVALGLLAGVAAVSLLALYGGVHGARDAGYHVRATLLAEELIARARLV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC APDQRAAALAAVDAGDIDACQPPSVKDQPRGDVVDADGWRAEVACQLPQAEVSAEAAADR CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHE IRVELRWQAPHRDAPSSLELSGQLPEVNR EEEEEEECCCCCCCCCCEEECCCCCCCCC >Mature Secondary Structure PRHSGFTLLEALVALGLLAGVAAVSLLALYGGVHGARDAGYHVRATLLAEELIARARLV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHC APDQRAAALAAVDAGDIDACQPPSVKDQPRGDVVDADGWRAEVACQLPQAEVSAEAAADR CCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEECCCHHHHHHHHHHE IRVELRWQAPHRDAPSSLELSGQLPEVNR EEEEEEECCCCCCCCCCEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA