| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121998579
Identifier: 121998579
GI number: 121998579
Start: 1972217
End: 1972849
Strand: Reverse
Name: 121998579
Synonym: Hhal_1800
Alternate gene names: NA
Gene position: 1972849-1972217 (Counterclockwise)
Preceding gene: 121998580
Following gene: 121998578
Centisome position: 73.66
GC content: 69.51
Gene sequence:
>633_bases ATGGATCCAAGCACGAAACGACAGTTGGTTGGGGCCGCGGTCCTGGTCGCCCTGGCCGTGATCTTCCTGCCGATGATCTT CTCCGGCTCCGATGAGGCCGAGGACGTGGATGTGCCGGTCGAGGTTCCGCCCCGCCCCGACGATCAGCCGGAACCCGAGG AGCTGGCCGAGCAGCCGCCGGAGGATCTCGACGAGGAGCCGGAAGATTTCACCGCCGAGGAGCCGGCCGGATTCGAGGAG CCGGAGGCCTCGGATGACGAGCCGGCCAGCCCCGACGAGCCCGAACGGGACGAGGATGAGGAGCAGGCGCGGGACGAGCC CGAGGAGACCGCCACCGAGGACGAAACCACCGACGAGGCGGTCGACGAGGTGAACGGCATCGCCATCGCCAGTCGGGAGC AGGGGGCGTACTCGGTCCAGGTGGGCAGTTTCCAGGAGGCAGAGAACGCCGAGCGGGAGCGCGACCGCATCCGCGATCTC GGGTTGCCGGCCTACATCGAGTCGCCGGACGGCGAGGGGTCGTCGTTCCACCGTGTGCGCATCGGTCCGGTCATGGAGCG GGACGAGGCGCAGGCGTTGCTCGAGCGCGCCGCTGACGAGGCCGGGGTGGAGGGGTACGTGGTGTCGCGATGA
Upstream 100 bases:
>100_bases CGCTCTCCAGGGCCAGGCCGGGCCCGGCGATCGGGTTGTGGTCTTTGGCTCCTTCCGCACTGTGGCCGCCGTACAAGCGC AGCAAGGCTGGGGGTAGGCG
Downstream 100 bases:
>100_bases ACTGGCTCGACCTCGTCATCGTCGGCGTCATCGCACTGTCGGCGGGGATCAGCCTGATCCGCGGTTTCGTGCGCGAGGTC CTCTCGGTACTCGTCTGGGT
Product: sporulation domain-containing protein
Products: NA
Alternate protein names: Sporulation Domain Protein
Number of amino acids: Translated: 210; Mature: 210
Protein sequence:
>210_residues MDPSTKRQLVGAAVLVALAVIFLPMIFSGSDEAEDVDVPVEVPPRPDDQPEPEELAEQPPEDLDEEPEDFTAEEPAGFEE PEASDDEPASPDEPERDEDEEQARDEPEETATEDETTDEAVDEVNGIAIASREQGAYSVQVGSFQEAENAERERDRIRDL GLPAYIESPDGEGSSFHRVRIGPVMERDEAQALLERAADEAGVEGYVVSR
Sequences:
>Translated_210_residues MDPSTKRQLVGAAVLVALAVIFLPMIFSGSDEAEDVDVPVEVPPRPDDQPEPEELAEQPPEDLDEEPEDFTAEEPAGFEE PEASDDEPASPDEPERDEDEEQARDEPEETATEDETTDEAVDEVNGIAIASREQGAYSVQVGSFQEAENAERERDRIRDL GLPAYIESPDGEGSSFHRVRIGPVMERDEAQALLERAADEAGVEGYVVSR >Mature_210_residues MDPSTKRQLVGAAVLVALAVIFLPMIFSGSDEAEDVDVPVEVPPRPDDQPEPEELAEQPPEDLDEEPEDFTAEEPAGFEE PEASDDEPASPDEPERDEDEEQARDEPEETATEDETTDEAVDEVNGIAIASREQGAYSVQVGSFQEAENAERERDRIRDL GLPAYIESPDGEGSSFHRVRIGPVMERDEAQALLERAADEAGVEGYVVSR
Specific function: Unknown
COG id: COG3147
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23024; Mature: 23024
Theoretical pI: Translated: 3.56; Mature: 3.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDPSTKRQLVGAAVLVALAVIFLPMIFSGSDEAEDVDVPVEVPPRPDDQPEPEELAEQPP CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCHHHHHHCCC EDLDEEPEDFTAEEPAGFEEPEASDDEPASPDEPERDEDEEQARDEPEETATEDETTDEA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHCCCCCHHHHH VDEVNGIAIASREQGAYSVQVGSFQEAENAERERDRIRDLGLPAYIESPDGEGSSFHRVR HHHHCCEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEE IGPVMERDEAQALLERAADEAGVEGYVVSR ECCCCCHHHHHHHHHHHHHHCCCCCEEECC >Mature Secondary Structure MDPSTKRQLVGAAVLVALAVIFLPMIFSGSDEAEDVDVPVEVPPRPDDQPEPEELAEQPP CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCCHHHHHHCCC EDLDEEPEDFTAEEPAGFEEPEASDDEPASPDEPERDEDEEQARDEPEETATEDETTDEA HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHCCCCCHHHHH VDEVNGIAIASREQGAYSVQVGSFQEAENAERERDRIRDLGLPAYIESPDGEGSSFHRVR HHHHCCEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCEEEEE IGPVMERDEAQALLERAADEAGVEGYVVSR ECCCCCHHHHHHHHHHHHHHCCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA