Click here to switch to the map view.

The map label for this gene is rbfA

Identifier: 121998527

GI number: 121998527

Start: 1919270

End: 1919650

Strand: Reverse

Name: rbfA

Synonym: Hhal_1748

Alternate gene names: 121998527

Gene position: 1919650-1919270 (Counterclockwise)

Preceding gene: 121998528

Following gene: 121998526

Centisome position: 71.67

GC content: 70.08

Gene sequence:

>381_bases
ATGGCCAAGGACTATCCGCGCAGCCGGCGCATCGCCGAGCAGCTCCGTCGTGAGCTGGCCGAGGTCATCCGAGACGATGT
CGACGACCCGCGCGTCGGGTCGGTGACCATCTCGGAGGTGCAGGTCAGTCGCGACCTGGCGCACGCCACCGTGTACGTCA
CCGTACTCGGCGCCGAGGCGGCCGAGGCGCAGGCCGGGATCGATATCCTGAACAAGGCCCACGGCTTCCTGCGCAGCCAG
GTGGCGCGGCGCATCCGCGCCAAGCGCACGCCCAGTCTGCGCTTCCTGCACGACACCGCCTTCGATCGCGGTGCGCGGCT
GAGTGCCCTGATCGACGAGGTGGCGCCGCCGCCGGCAGACGACGAACCGAGCAAGGAGTAG

Upstream 100 bases:

>100_bases
GAGTGCGGTATCGGCGTGAAGAACTACAACGACGTTCGTGCCGGCGACCAGATCGAGTGCTACGAGCGGGTCGAGGTGCA
GCGGAGCCTGTAACGCGCAT

Downstream 100 bases:

>100_bases
AAGGCGAATGGCGAAGAGGCGGGGTGGGCGCAACGTCACCGGCGTGCTGTTGTTCGACAAGCCGGCTGGCGTGACCTCCA
ATAAGGCCCTGCAACAGGTT

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MAKDYPRSRRIAEQLRRELAEVIRDDVDDPRVGSVTISEVQVSRDLAHATVYVTVLGAEAAEAQAGIDILNKAHGFLRSQ
VARRIRAKRTPSLRFLHDTAFDRGARLSALIDEVAPPPADDEPSKE

Sequences:

>Translated_126_residues
MAKDYPRSRRIAEQLRRELAEVIRDDVDDPRVGSVTISEVQVSRDLAHATVYVTVLGAEAAEAQAGIDILNKAHGFLRSQ
VARRIRAKRTPSLRFLHDTAFDRGARLSALIDEVAPPPADDEPSKE
>Mature_125_residues
AKDYPRSRRIAEQLRRELAEVIRDDVDDPRVGSVTISEVQVSRDLAHATVYVTVLGAEAAEAQAGIDILNKAHGFLRSQV
ARRIRAKRTPSLRFLHDTAFDRGARLSALIDEVAPPPADDEPSKE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=116, Percent_Identity=39.6551724137931, Blast_Score=94, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_HALHL (A1WXV0)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001003314.1
- ProteinModelPortal:   A1WXV0
- SMR:   A1WXV0
- STRING:   A1WXV0
- GeneID:   4710481
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_1748
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   SIEYGNR
- PhylomeDB:   A1WXV0
- BioCyc:   HHAL349124:HHAL_1748-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 13971; Mature: 13840

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDYPRSRRIAEQLRRELAEVIRDDVDDPRVGSVTISEVQVSRDLAHATVYVTVLGAEA
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHEEEEECCHH
AEAQAGIDILNKAHGFLRSQVARRIRAKRTPSLRFLHDTAFDRGARLSALIDEVAPPPAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCC
DEPSKE
CCCCCC
>Mature Secondary Structure 
AKDYPRSRRIAEQLRRELAEVIRDDVDDPRVGSVTISEVQVSRDLAHATVYVTVLGAEA
CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEHHHHHHHHHHHHHHHEEEEECCHH
AEAQAGIDILNKAHGFLRSQVARRIRAKRTPSLRFLHDTAFDRGARLSALIDEVAPPPAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCCCC
DEPSKE
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA