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The map label for this gene is yprB [H]

Identifier: 121998481

GI number: 121998481

Start: 1857623

End: 1858495

Strand: Reverse

Name: yprB [H]

Synonym: Hhal_1702

Alternate gene names: 121998481

Gene position: 1858495-1857623 (Counterclockwise)

Preceding gene: 121998482

Following gene: 121998480

Centisome position: 69.39

GC content: 71.48

Gene sequence:

>873_bases
GTGAGCCTGTCCAAGCGGATCGATCGGCTGCGCGCCCAGGCTGGCGGCCGGGCGGTGGCTGCGGTGTCTGAGTCGGCAAC
GCCGGGTGTGCGTGAGCGCCTGGCGCGTATCGAGACGCGCCAGCGGCGCGCGGCGTGGCGGCCCCGCAGTCAGCGCCCCG
ACGACCAGGCCGTGGCCGAGCAGGTCGGTGGCTCGGTCCTGGCGCCCGGGCTCATTGAGGTCGAGCGTGTGGTGGGGCTG
GATACGGCCTACGGCCGGCAGTCCCTGGCTCCGCTGCGAGGAGCGCTGCAGGGGATGCCCGAGGGCGCCGAGCTGGATCC
CCAGCGGGCATTGTGGCTGGATACCGAGACCACCGGGTTGGCCGGCGGGACCGGCACCGTGGTGTTTCTGCTCGGGGTCG
GTTGCCTGGCGGGCTCGGACCTGAGAGTTCGGCACTGGCTGCTGACCGGCTTCAGCGGCGAGCCGGCCATGCTGGAGCGA
CTGAGCGAACTGCTGGGGGGGACGGATGGGCTTGTCACCTACAACGGCAAGTCGTTCGACATCCCGTTGCTCCAGAGCCG
GGCCCGGCTCCACGGGGTCGACCTCGGGCTGCAGGGCCGGATGCATCTCGATCTGCTCCATCCGACACGGCGGGTCTTTC
GTCGGCACTGGCCCAACTGCCGGCTGACCACGGCCGAACGACGGCTCCTTGGGCGCGAGCGGCTCGACGATCTGCCTGGT
GCCGAGGCGCCGGCGGCCTGGCTCGATTTCCTTCAGCGGGGCGACCCCCGGCAACTGCCGGCGGTGGTGCGCCATAACAG
CGACGATATCCTGGCCCTTGCGGCCCTCTGGGTGGCCCTGGATCGGGTCTACCGCGAAGGGGGCGCATCGTGA

Upstream 100 bases:

>100_bases
TGAGCAGGGCCAATTGGTGGATTCCCACACCGGCCAGGTTTCCAGCGCCTCGCTGGAGAGCGGTCTGGAACGGCTGCGCT
GAACGGAGGGCAACGAGGCG

Downstream 100 bases:

>100_bases
CACCGCCGCGGATCTTGGTTGGTGGCCCCGGGGAGCTCCCGCCGGACCGCCACCCTACCGGCTTCTACAAACAGGAGGTC
CAGGCGCCCTGCTGGCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 290; Mature: 289

Protein sequence:

>290_residues
MSLSKRIDRLRAQAGGRAVAAVSESATPGVRERLARIETRQRRAAWRPRSQRPDDQAVAEQVGGSVLAPGLIEVERVVGL
DTAYGRQSLAPLRGALQGMPEGAELDPQRALWLDTETTGLAGGTGTVVFLLGVGCLAGSDLRVRHWLLTGFSGEPAMLER
LSELLGGTDGLVTYNGKSFDIPLLQSRARLHGVDLGLQGRMHLDLLHPTRRVFRRHWPNCRLTTAERRLLGRERLDDLPG
AEAPAAWLDFLQRGDPRQLPAVVRHNSDDILALAALWVALDRVYREGGAS

Sequences:

>Translated_290_residues
MSLSKRIDRLRAQAGGRAVAAVSESATPGVRERLARIETRQRRAAWRPRSQRPDDQAVAEQVGGSVLAPGLIEVERVVGL
DTAYGRQSLAPLRGALQGMPEGAELDPQRALWLDTETTGLAGGTGTVVFLLGVGCLAGSDLRVRHWLLTGFSGEPAMLER
LSELLGGTDGLVTYNGKSFDIPLLQSRARLHGVDLGLQGRMHLDLLHPTRRVFRRHWPNCRLTTAERRLLGRERLDDLPG
AEAPAAWLDFLQRGDPRQLPAVVRHNSDDILALAALWVALDRVYREGGAS
>Mature_289_residues
SLSKRIDRLRAQAGGRAVAAVSESATPGVRERLARIETRQRRAAWRPRSQRPDDQAVAEQVGGSVLAPGLIEVERVVGLD
TAYGRQSLAPLRGALQGMPEGAELDPQRALWLDTETTGLAGGTGTVVFLLGVGCLAGSDLRVRHWLLTGFSGEPAMLERL
SELLGGTDGLVTYNGKSFDIPLLQSRARLHGVDLGLQGRMHLDLLHPTRRVFRRHWPNCRLTTAERRLLGRERLDDLPGA
EAPAAWLDFLQRGDPRQLPAVVRHNSDDILALAALWVALDRVYREGGAS

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31687; Mature: 31555

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSKRIDRLRAQAGGRAVAAVSESATPGVRERLARIETRQRRAAWRPRSQRPDDQAVAE
CCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
QVGGSVLAPGLIEVERVVGLDTAYGRQSLAPLRGALQGMPEGAELDPQRALWLDTETTGL
HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
AGGTGTVVFLLGVGCLAGSDLRVRHWLLTGFSGEPAMLERLSELLGGTDGLVTYNGKSFD
CCCHHHHHHHHHHHHHCCCCCEEEEHEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCC
IPLLQSRARLHGVDLGLQGRMHLDLLHPTRRVFRRHWPNCRLTTAERRLLGRERLDDLPG
CHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCC
AEAPAAWLDFLQRGDPRQLPAVVRHNSDDILALAALWVALDRVYREGGAS
CCCCHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SLSKRIDRLRAQAGGRAVAAVSESATPGVRERLARIETRQRRAAWRPRSQRPDDQAVAE
CHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
QVGGSVLAPGLIEVERVVGLDTAYGRQSLAPLRGALQGMPEGAELDPQRALWLDTETTGL
HHCCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCC
AGGTGTVVFLLGVGCLAGSDLRVRHWLLTGFSGEPAMLERLSELLGGTDGLVTYNGKSFD
CCCHHHHHHHHHHHHHCCCCCEEEEHEEECCCCCHHHHHHHHHHHCCCCCEEEECCCCCC
IPLLQSRARLHGVDLGLQGRMHLDLLHPTRRVFRRHWPNCRLTTAERRLLGRERLDDLPG
CHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHCCCC
AEAPAAWLDFLQRGDPRQLPAVVRHNSDDILALAALWVALDRVYREGGAS
CCCCHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]