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The map label for this gene is secD

Identifier: 121998475

GI number: 121998475

Start: 1852345

End: 1854201

Strand: Reverse

Name: secD

Synonym: Hhal_1696

Alternate gene names: 121998475

Gene position: 1854201-1852345 (Counterclockwise)

Preceding gene: 121998476

Following gene: 121998474

Centisome position: 69.23

GC content: 66.18

Gene sequence:

>1857_bases
TTGAATCGCTATCCGCTCTGGAAATACCTGCTGGTGGTCGCCGTCCTGGTGGTCGGCGGCCTCTTCGCGCTGCCCAACCT
CTTCGGTGAGGATCCCTCGGTGGTGATCACCACCGGCGACGACGAGGTACCGAGCGAGGAAGTCCAGTCCGACGTCCTCG
GCTTCCTCGAGGAAGAGGGCTACAAGCCGCTCTCCGCCGAGGTACTGGAGGGGCAGTGGGTGCTTCGCTACGGCTCCACC
GACGAGCAGATGCGGGCCTCGGACCTGATCTCGGCCAAGCTCGACCGAGAGTACTCCGTGGCCATGACGCTGGTGCCGGC
GACCCCGCAGTGGCTGCGCGCCATGGGGGCGGAACCCATGTTCCTCGGCCTTGATCTGCGCGGCGGCGTGCACTTCCTGC
TTCAGGTCGATATCGACGCCATGGTCGGCGAGACCATGGAGGGGCACCAGCAGGATATCCGGACGCTGTTCCGGGAGGAG
CGGATTCGCTTCTCGGCGCTGGAGGTGACCGACGAGCAGCAGATCCGCATGGCGTTTGCCGACACGGACCTGCGCGCGCG
GGCCCTGGAGGCGCTCGAGGAGCATATCGAGGGCCTGAACTACAGCGAGGAAGAGGACGAAGACACCTACACCCTGATCG
CCTCCATGGACGAGGAGGAGCTTCAGGAGATGAAGGACCTGGCGGTCCAGCAGAACATCACCACGCTCCGCAACCGCGTG
GACGAGCTGGGTGTCGCCGAGCCGGTGATTCAGCGCCAGGGCGCGGATCGCATCGTGGTCCAGCTGCCCGGTATTCAGGA
CCCCGGGCAGGCCAAGGAGATCCTCGGCGCCACAGCGACCCTGGAGTTTCGGTTTGTCGATCACGCCAACTTCCCCTTCA
CCGGCGATCCGGACGATCCGCCGGAAGGCTCCGAGGTCTTCCCTCAGCGCGATGGCGGCTATGTCGCGCTCGAGCGCCAG
CGCATCCTCTCCGGCGATCGCATCATCGATGCCTCCTCCGGGTTCGATCAGGAGAGTGGTTCGCCCGAGGTGAACATCCG
ACTGTCCGGAACCGGCGGGCGCATCATGAACCGGGCCACCCGGGACCGGGTCGGCGACCATATGGCGGTGCTCTTCCAGG
AGCGGATCTCCGAGACGCAGATGGTCGACGGCGAGCCGGAGCGGGTGATCCGCGAGCTTGAGGAGGTCATCTCGGTCGCG
CGGATCCGCGAGGGGCTGGGTAGTCGCTTCCGCATCACCGGGCTCGATTCCAGCCAGGAGGCCAGTAACCTGGCCCTGCT
GCTGCGCGCCGGTGCCCTGGCCGCGCCCATCGACATCGTCGAGGAACGCACCATCGGGCCGAGCCTGGGTGCCGAGAACG
TCGAGCGGGGCTTCATGGCGGTGGTGATCGGATTCCTGCTGGTGATCGCCTTCATGGCGCTCTACTACCGCACCTTCGGT
CTGGTGGCTAACCTGGCGCTGCTCAGCAATCTGGTGATCATCGTCGCCGTGCTCTCCATGCTGCAGGCGACCCTGACGCT
GCCGGGCATCGCCGGGATCGTGCTGACCGTGGGGATGGCGGTGGACGCCAACGTGCTCATCTTCCAGCGCATCCGCGAGG
AGCTGAAGGCCGGTGCGCCGATCCAGACCGCCATCGATGCCGGCTACGGCAAGGCGCTGTCGACCATCGCCGACGCCAAT
GTCACCACGCTGATCGCCGCCCTGGTGCTGTTCCTCTTTGGCACCGGACCGGTCCAGGGCTTCGCCGTGACGCTGGCCAT
CGGTCTGGCCACGTCGATGTTCACCGCCATTGTCGGCACGCGGGCCGTGATCAACCTGATCTACGGCGGGCGCAAGGTCT
CGGAGCTCAAGATCTAG

Upstream 100 bases:

>100_bases
GGTGGCCAACGGCGTGCAACTGCAGATCCAGAAGAACGCCGTGGCCAGCGTCATGCCCAAGGGCACCCTCAAGGAACAGG
ACAAAAAGGGCAAGTAGCTC

Downstream 100 bases:

>100_bases
CCATGGAGATCTTCAAGAACGATCCCAATATCGACTTCCTCGGCCGGCGCCGCATCGGCTTCGGGCTCTCGGCGGTGCTG
CTGGTGCTCTCCATCGGCTC

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 618; Mature: 618

Protein sequence:

>618_residues
MNRYPLWKYLLVVAVLVVGGLFALPNLFGEDPSVVITTGDDEVPSEEVQSDVLGFLEEEGYKPLSAEVLEGQWVLRYGST
DEQMRASDLISAKLDREYSVAMTLVPATPQWLRAMGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREE
RIRFSALEVTDEQQIRMAFADTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNITTLRNRV
DELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFTGDPDDPPEGSEVFPQRDGGYVALERQ
RILSGDRIIDASSGFDQESGSPEVNIRLSGTGGRIMNRATRDRVGDHMAVLFQERISETQMVDGEPERVIRELEEVISVA
RIREGLGSRFRITGLDSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALYYRTFG
LVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGAPIQTAIDAGYGKALSTIADAN
VTTLIAALVLFLFGTGPVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVSELKI

Sequences:

>Translated_618_residues
MNRYPLWKYLLVVAVLVVGGLFALPNLFGEDPSVVITTGDDEVPSEEVQSDVLGFLEEEGYKPLSAEVLEGQWVLRYGST
DEQMRASDLISAKLDREYSVAMTLVPATPQWLRAMGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREE
RIRFSALEVTDEQQIRMAFADTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNITTLRNRV
DELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFTGDPDDPPEGSEVFPQRDGGYVALERQ
RILSGDRIIDASSGFDQESGSPEVNIRLSGTGGRIMNRATRDRVGDHMAVLFQERISETQMVDGEPERVIRELEEVISVA
RIREGLGSRFRITGLDSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALYYRTFG
LVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGAPIQTAIDAGYGKALSTIADAN
VTTLIAALVLFLFGTGPVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVSELKI
>Mature_618_residues
MNRYPLWKYLLVVAVLVVGGLFALPNLFGEDPSVVITTGDDEVPSEEVQSDVLGFLEEEGYKPLSAEVLEGQWVLRYGST
DEQMRASDLISAKLDREYSVAMTLVPATPQWLRAMGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREE
RIRFSALEVTDEQQIRMAFADTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNITTLRNRV
DELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFTGDPDDPPEGSEVFPQRDGGYVALERQ
RILSGDRIIDASSGFDQESGSPEVNIRLSGTGGRIMNRATRDRVGDHMAVLFQERISETQMVDGEPERVIRELEEVISVA
RIREGLGSRFRITGLDSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALYYRTFG
LVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGAPIQTAIDAGYGKALSTIADAN
VTTLIAALVLFLFGTGPVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVSELKI

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=619, Percent_Identity=49.5961227786753, Blast_Score=576, Evalue=1e-165,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67502; Mature: 67502

Theoretical pI: Translated: 4.22; Mature: 4.22

Prosite motif: PS50522 RDRP_PHAGE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYPLWKYLLVVAVLVVGGLFALPNLFGEDPSVVITTGDDEVPSEEVQSDVLGFLEEEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
YKPLSAEVLEGQWVLRYGSTDEQMRASDLISAKLDREYSVAMTLVPATPQWLRAMGAEPM
CCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHCCCCCE
FLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREERIRFSALEVTDEQQIRMAFA
EEEEECCCCEEEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHEEEEC
DTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNITTLRNRV
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
DELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFTGDPDDP
HHCCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCCCC
PEGSEVFPQRDGGYVALERQRILSGDRIIDASSGFDQESGSPEVNIRLSGTGGRIMNRAT
CCCCCCCCCCCCCEEEEEHHHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHH
RDRVGDHMAVLFQERISETQMVDGEPERVIRELEEVISVARIREGLGSRFRITGLDSSQE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
ASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALYYRTFG
HHHHHHHHHHCCHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGAP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
IQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTGPVQGFAVTLAIGLATSMFTAIVGT
HHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RAVINLIYGGRKVSELKI
HHHHHHHHCCCCHHCCCC
>Mature Secondary Structure
MNRYPLWKYLLVVAVLVVGGLFALPNLFGEDPSVVITTGDDEVPSEEVQSDVLGFLEEEG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHCC
YKPLSAEVLEGQWVLRYGSTDEQMRASDLISAKLDREYSVAMTLVPATPQWLRAMGAEPM
CCCCCHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEEEECCCHHHHHHCCCCCE
FLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREERIRFSALEVTDEQQIRMAFA
EEEEECCCCEEEEEEEEHHHHHCCHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHEEEEC
DTDLRARALEALEEHIEGLNYSEEEDEDTYTLIASMDEEELQEMKDLAVQQNITTLRNRV
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
DELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILGATATLEFRFVDHANFPFTGDPDDP
HHCCCCCHHHHHCCCCEEEEEECCCCCCCHHHHHHCCEEEEEEEEEECCCCCCCCCCCCC
PEGSEVFPQRDGGYVALERQRILSGDRIIDASSGFDQESGSPEVNIRLSGTGGRIMNRAT
CCCCCCCCCCCCCEEEEEHHHHCCCCCEEECCCCCCCCCCCCEEEEEEECCCCHHHHHHH
RDRVGDHMAVLFQERISETQMVDGEPERVIRELEEVISVARIREGLGSRFRITGLDSSQE
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH
ASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALYYRTFG
HHHHHHHHHHCCHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELKAGAP
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
IQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTGPVQGFAVTLAIGLATSMFTAIVGT
HHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
RAVINLIYGGRKVSELKI
HHHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]