| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998467
Identifier: 121998467
GI number: 121998467
Start: 1842764
End: 1843348
Strand: Reverse
Name: 121998467
Synonym: Hhal_1688
Alternate gene names: NA
Gene position: 1843348-1842764 (Counterclockwise)
Preceding gene: 121998469
Following gene: 121998466
Centisome position: 68.82
GC content: 63.08
Gene sequence:
>585_bases ATGTACCGCAAGACTGCCGCTTCCGCGATTGTCCTGATGCTCGCCACCTCAGGTGCCTACGCTCAGATGGCCCCCGATGA GGGACAGGGCATGCAGCCGCAGATGTCCGAGGGCCAGCAGCGCATGCAGGAGATCCAGCAGCAGCTGGGCCAGATGCAGC AGGACACCCTCGAGTCCAACCCGGAGCTGGAAGAGCGCGCCGAGGAGCTGGATGACCGGCTGCTGGACCAGATGGAAGAC ATGGGCTACGACAATGTCCGCCAGGACATCGAGCGCCTGGAAGAGACCATGGAGGCGATGCACTCCGGCGAGATGTCCCA GGAGGAGGTCCAGCAGCGCATGCAGGAGGATCAGCAGATCCACATGGAGCTGCAGCAGGCCCAGCAGGAGGCCATGCAGG ATGAGGACTTTGTCCAGCCGTGGCAGGAGGACCGCCAGCAGCTGGAGCAGGACCTAATCGACACCATGTACGACGAGAAT CCTCAGGCCGAGGACCTGATGCAGGAGATGGAGGAACTGCAGGCTGAGATGCAGCAGGGCATGGGCGGTCAGCAGCAGAT GCCCGAGGGGGAGATGCCCCAGTAA
Upstream 100 bases:
>100_bases CCGCGGGGGTCCGGAACCATTTGCCCCTGGGCGCTGTCTTCCGGGGTAAGGCCGTTGCGACGGTTTGAACGCACCGAACT GGTTTGACGAGGAGTCGTTT
Downstream 100 bases:
>100_bases ACCCCAAAACCTGGGATAGAGGTGCGCCGTCGGCGTCGGGTGCTAACATAGGCCGGCGCGGTAGCGACCTGGCCGCTTCC GTGGTGGGAATAGCTAAGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 194; Mature: 194
Protein sequence:
>194_residues MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESNPELEERAEELDDRLLDQMED MGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQIHMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDEN PQAEDLMQEMEELQAEMQQGMGGQQQMPEGEMPQ
Sequences:
>Translated_194_residues MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESNPELEERAEELDDRLLDQMED MGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQIHMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDEN PQAEDLMQEMEELQAEMQQGMGGQQQMPEGEMPQ >Mature_194_residues MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESNPELEERAEELDDRLLDQMED MGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQIHMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDEN PQAEDLMQEMEELQAEMQQGMGGQQQMPEGEMPQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22660; Mature: 22660
Theoretical pI: Translated: 3.54; Mature: 3.54
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 11.3 %Met (Translated Protein) 11.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 11.3 %Met (Mature Protein) 11.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESN CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PELEERAEELDDRLLDQMEDMGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQI CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH HMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDENPQAEDLMQEMEELQAEMQQG HHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC MGGQQQMPEGEMPQ CCCCCCCCCCCCCC >Mature Secondary Structure MYRKTAASAIVLMLATSGAYAQMAPDEGQGMQPQMSEGQQRMQEIQQQLGQMQQDTLESN CCHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC PELEERAEELDDRLLDQMEDMGYDNVRQDIERLEETMEAMHSGEMSQEEVQQRMQEDQQI CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH HMELQQAQQEAMQDEDFVQPWQEDRQQLEQDLIDTMYDENPQAEDLMQEMEELQAEMQQG HHHHHHHHHHHHCCHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC MGGQQQMPEGEMPQ CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA