| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998348
Identifier: 121998348
GI number: 121998348
Start: 1709379
End: 1710617
Strand: Reverse
Name: 121998348
Synonym: Hhal_1569
Alternate gene names: NA
Gene position: 1710617-1709379 (Counterclockwise)
Preceding gene: 121998349
Following gene: 121998341
Centisome position: 63.87
GC content: 59.0
Gene sequence:
>1239_bases ATGAAGATTGACAGACCGCCTGCCACCCTGCTGCTGGGGCATTTCCCGCGGATTGTGGTGCCCGTCGCGCGTTGTCTGAG TGGCAAGGGAATCCCAGTCTATGGGGCTTGTTTTTCCGGCGAGGGAGCGTCAATCAAAACGAAAGCCCTCGAAGGATATC TGACGCTCGAGCATCCAGATGACTCGCTTGATGCTTTCTGTGAGAGCCTCCTTGGGGCTGTTGATCGCTACGGTATCGAT ACCGTAGTGCCAGTCGGCGATGGTGCTCTTAGCGCTTTAGCGGCTTGTGATGACGTACTCGGTGAGCGCATTCTGCGCAT GTACCCGGACAAAGAGCGGGCGCGAAGCGTTCTGGATAAGTCGGGAACCCTAGCTGTAGCCGAGCGTCTCGGGGTGCCTA TGCCGCGGACCCTTTACATTCGCGCCGATGAAGAGCCAGAGAGCTGGATTGAAAATCTGCATTTCCCGGTTGTGGTTAAA CCCTCAGATCGTGGCAGGCCCAGTCCGGTACGCATCCGCTATTTTAATCGACACAGCGAGCTGCAGGATTTTCTGAACGC CCACAGCGCGTGGGGTACCGAGTGGATGGTCCAGGAGTACGTTCCGGGAAGTGGGGTCGGTGTTGAGGTGCTGATGGACC GGGGTAGACCGGTGACGATATTTCAGCATCGCCGTCTCAAGGAGCTCCCACGCAGCGGTGGTGTTGCGGTGCGTTGCGTT AGTGAAAGGCCGGATCCAGTGTTGCGCAGTTACGCTGTGGAACTGCTGAAGGCGCTGGAGTGGCAGGGGCTGGCGATGGT GGAGATGCGCTATGATGCAGCATCTGGACGGGCCGCTTTGATGGAGATCAACGGCCGCTGCTGGGGGTCGATTGGGTTGC CGATCCAGTGCGGAGTTGCTTTCCCTTACTATGCCTGGCAACTACTTCATGGCAAGGAGCCGGAGATTCCGGATTCCTAC CCGGTTGGCCAACGTATGCGGTGGCTAGGGGGAGACCTGAGGCGGTTGCCTGAGCTCTTCTCGGGCGTGACCCAAGGCGA AGTATCACTAGCCAGTGCGGCAAAGGATGTGGGCACCTTCGGGGCGGATTTTGTGAATTCCACCCGGGACGCCTTATGGG CGTGGCGAGACGTCCAGCCAGCGTGGCAGAATTTGTCCACCTCCTCTGCGTTGGTGGCCCGCCAAGTGGGGCGGAAGGCA CTCAAGGTTTTCGCTTCCAAACGGCCTGGATCTGCCTGA
Upstream 100 bases:
>100_bases GGAGGGAGCGGATCACACCTTCTCTCGTGCCGTCTGGCGCAATCAGGTGGCGGAATGGACGCTGCAGTGGCTTGAAGCGA GCCGTCGTGATGGGTGCTGA
Downstream 100 bases:
>100_bases ATACCTGGTTTGCCCGGCGTGCCGCCGCACGTGACCGCTGTACGGCCTGGTGGCGGTAAAAATTGAGGTGCTCGATCGAA CGGCTATCCGTCGCCCACTC
Product: hypothetical protein
Products: NA
Alternate protein names: ATP-Grasp -Like Protein; ATP-Grasp -Like; Protein Tyrosine Phosphatase; ATP-Grasp Protein
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MKIDRPPATLLLGHFPRIVVPVARCLSGKGIPVYGACFSGEGASIKTKALEGYLTLEHPDDSLDAFCESLLGAVDRYGID TVVPVGDGALSALAACDDVLGERILRMYPDKERARSVLDKSGTLAVAERLGVPMPRTLYIRADEEPESWIENLHFPVVVK PSDRGRPSPVRIRYFNRHSELQDFLNAHSAWGTEWMVQEYVPGSGVGVEVLMDRGRPVTIFQHRRLKELPRSGGVAVRCV SERPDPVLRSYAVELLKALEWQGLAMVEMRYDAASGRAALMEINGRCWGSIGLPIQCGVAFPYYAWQLLHGKEPEIPDSY PVGQRMRWLGGDLRRLPELFSGVTQGEVSLASAAKDVGTFGADFVNSTRDALWAWRDVQPAWQNLSTSSALVARQVGRKA LKVFASKRPGSA
Sequences:
>Translated_412_residues MKIDRPPATLLLGHFPRIVVPVARCLSGKGIPVYGACFSGEGASIKTKALEGYLTLEHPDDSLDAFCESLLGAVDRYGID TVVPVGDGALSALAACDDVLGERILRMYPDKERARSVLDKSGTLAVAERLGVPMPRTLYIRADEEPESWIENLHFPVVVK PSDRGRPSPVRIRYFNRHSELQDFLNAHSAWGTEWMVQEYVPGSGVGVEVLMDRGRPVTIFQHRRLKELPRSGGVAVRCV SERPDPVLRSYAVELLKALEWQGLAMVEMRYDAASGRAALMEINGRCWGSIGLPIQCGVAFPYYAWQLLHGKEPEIPDSY PVGQRMRWLGGDLRRLPELFSGVTQGEVSLASAAKDVGTFGADFVNSTRDALWAWRDVQPAWQNLSTSSALVARQVGRKA LKVFASKRPGSA >Mature_412_residues MKIDRPPATLLLGHFPRIVVPVARCLSGKGIPVYGACFSGEGASIKTKALEGYLTLEHPDDSLDAFCESLLGAVDRYGID TVVPVGDGALSALAACDDVLGERILRMYPDKERARSVLDKSGTLAVAERLGVPMPRTLYIRADEEPESWIENLHFPVVVK PSDRGRPSPVRIRYFNRHSELQDFLNAHSAWGTEWMVQEYVPGSGVGVEVLMDRGRPVTIFQHRRLKELPRSGGVAVRCV SERPDPVLRSYAVELLKALEWQGLAMVEMRYDAASGRAALMEINGRCWGSIGLPIQCGVAFPYYAWQLLHGKEPEIPDSY PVGQRMRWLGGDLRRLPELFSGVTQGEVSLASAAKDVGTFGADFVNSTRDALWAWRDVQPAWQNLSTSSALVARQVGRKA LKVFASKRPGSA
Specific function: Unknown
COG id: COG3919
COG function: function code R; Predicted ATP-grasp enzyme
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45356; Mature: 45356
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: PS50975 ATP_GRASP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIDRPPATLLLGHFPRIVVPVARCLSGKGIPVYGACFSGEGASIKTKALEGYLTLEHPD CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECEEEEECCC DSLDAFCESLLGAVDRYGIDTVVPVGDGALSALAACDDVLGERILRMYPDKERARSVLDK CHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC SGTLAVAERLGVPMPRTLYIRADEEPESWIENLHFPVVVKPSDRGRPSPVRIRYFNRHSE CCCCHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCHHH LQDFLNAHSAWGTEWMVQEYVPGSGVGVEVLMDRGRPVTIFQHRRLKELPRSGGVAVRCV HHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCEEEEEE SERPDPVLRSYAVELLKALEWQGLAMVEMRYDAASGRAALMEINGRCWGSIGLPIQCGVA CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCEEECCCCCEEECCC FPYYAWQLLHGKEPEIPDSYPVGQRMRWLGGDLRRLPELFSGVTQGEVSLASAAKDVGTF CHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC GADFVNSTRDALWAWRDVQPAWQNLSTSSALVARQVGRKALKVFASKRPGSA CHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MKIDRPPATLLLGHFPRIVVPVARCLSGKGIPVYGACFSGEGASIKTKALEGYLTLEHPD CCCCCCCHHHHHHCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEECEEEEECCC DSLDAFCESLLGAVDRYGIDTVVPVGDGALSALAACDDVLGERILRMYPDKERARSVLDK CHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHC SGTLAVAERLGVPMPRTLYIRADEEPESWIENLHFPVVVKPSDRGRPSPVRIRYFNRHSE CCCCHHHHHHCCCCCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCCCCEEEEEECCHHH LQDFLNAHSAWGTEWMVQEYVPGSGVGVEVLMDRGRPVTIFQHRRLKELPRSGGVAVRCV HHHHHHHHHCCCCHHHHHHCCCCCCCCEEEEECCCCCEEHHHHHHHHHCCCCCCEEEEEE SERPDPVLRSYAVELLKALEWQGLAMVEMRYDAASGRAALMEINGRCWGSIGLPIQCGVA CCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEECCCEEECCCCCEEECCC FPYYAWQLLHGKEPEIPDSYPVGQRMRWLGGDLRRLPELFSGVTQGEVSLASAAKDVGTF CHHHHHHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC GADFVNSTRDALWAWRDVQPAWQNLSTSSALVARQVGRKALKVFASKRPGSA CHHHHHHHHHHHHHHHCCCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA