| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121998197
Identifier: 121998197
GI number: 121998197
Start: 1527208
End: 1528371
Strand: Reverse
Name: 121998197
Synonym: Hhal_1415
Alternate gene names: NA
Gene position: 1528371-1527208 (Counterclockwise)
Preceding gene: 121998198
Following gene: 121998196
Centisome position: 57.06
GC content: 67.7
Gene sequence:
>1164_bases ATGGCTGAACGGATCGCCAGGCTGCGCCGGGCTGCGGCCTGTGTCCTGCTCGTTCTGGTTGCGGGGTGTATGGATCCACC GGAGGGCGAGGACGCGGCCGAGCAACAGCGCATTACCGTGGCCGGGGCGCTCTCCGGCGAGCAGGATGCCGAGGGGTACG CGCGGGCGCTCGGGCCGCGCCCCCTAGTCTTCCCAGAAGATCATGGCCCCCATCCCGCTTACCGCCACGAGTGGTGGTAC ATCACCGGCAATCTGTTCGATGAGGATGGTCGCCACTTCGGGTTCCAGATCACCTTTTTCCGGTTCGCCCTGCGTCCCGA GCCGAGTCCGCGGCCATCGGCGTGGGGGACCAACCAGCTCTGGATGGCCCACTTCGCGGTAACCGACACCGAGGGGGAGA CCTACCACCACTTCGAGCGGCTGGCACGAGGAGCCCTCGGACTCGCCGGTGCCCAGCCCGATCCATTCCGGGTCTGGCTC GAGGATTGGGAGGTACGCGGTACGCCGGGTGCCGGCCTGGCGCAGTTGCAGACCCGTCTGGAGGCCGGCGGCGTGGAATT GGTGCTGGACCTTGAAGCCCGCAAGCCGATCGTCTTCCAGGGGGAAGACGGGTACAGCCAGAAGGGGGACGCCCCCGGGA ACGCCTCCTATTACTACACCGTCCCGCGGCTTGGGGCCGAGGGGCGCGTGGTGGTGCCCGACGGCGAACACGCGGTCTCG GGCACGGCCTGGATCGATCGCGAGTGGGGCAGCAGCACCCTGAGCGAGGAGCAGAGCGGGTGGGACTGGTTCTCTATTCA ACTCGACGATGACCGCGAACTGATGTTCTACCACCTGCGCCGGGAGGATGGCAGCATCGACCCGAGGAGCAAGGGCGGAT GGGTGGACGAGGACGGCCGCCATCGAGTCGTGACCCGCGACGATGTGACCCTGGAGGTGCTCGACCACTGGACCAGTCCG GATGGTGAGGCCACCTATCCGGCGCGCTGGCGGCTAGACTACCCGGAAGAAGATCTGACGCTGGAGCTCGAACCGGTCCT GGCCGATCAGGAGCTGCGCGACGGGTTCCGGTACTGGGAGGGTGCACTGCGCGGTCGTGGCCAGGCCGCGGGGCGTCCGG TGACCGCCGTGGGGTATGCCGAACTGACTGGATACGTCGACTAG
Upstream 100 bases:
>100_bases GGCCAGGCAGTTGCGTTGGCCACGGTGGCCGCCTTGCTCGCCGGGCTCTATCCGGCCTACCGTGCGGCCCGAGTCCCGCC GGGGGAGGCGATGCGTGAGG
Downstream 100 bases:
>100_bases GAGGGGTGTCGTGCACAAGATCCTTTATGCCACCGACCTGAGCGAGCGGACGGAAGCTGCGGCGCAGCGCAGTGTGGAGC TGGCCCGGCGTCACAGCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: Secreted Hydrolase; Hydrolase; Lipoprotein; ABC Transporter Type C Secreted Protein; Hydroxyneurosporene Synthase; ABC Transporter Lipoprotein; Secreted Hydrolase-Like; Twin-Arginine Translocation Pathway Signal; ABC-Type Transport System Hydrolase Component; Signal Peptide; Prefoldin Molecular Chaperone; Attachment Protein; Hydroxymethylglutaryl-Co A Reductase
Number of amino acids: Translated: 387; Mature: 386
Protein sequence:
>387_residues MAERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPRPLVFPEDHGPHPAYRHEWWY ITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQLWMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWL EDWEVRGTPGAGLAQLQTRLEAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGRHRVVTRDDVTLEVLDHWTSP DGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWEGALRGRGQAAGRPVTAVGYAELTGYVD
Sequences:
>Translated_387_residues MAERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPRPLVFPEDHGPHPAYRHEWWY ITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQLWMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWL EDWEVRGTPGAGLAQLQTRLEAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGRHRVVTRDDVTLEVLDHWTSP DGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWEGALRGRGQAAGRPVTAVGYAELTGYVD >Mature_386_residues AERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPRPLVFPEDHGPHPAYRHEWWYI TGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQLWMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWLE DWEVRGTPGAGLAQLQTRLEAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVSG TAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGRHRVVTRDDVTLEVLDHWTSPD GEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWEGALRGRGQAAGRPVTAVGYAELTGYVD
Specific function: Unknown
COG id: COG5621
COG function: function code R; Predicted secreted hydrolase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43396; Mature: 43265
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPR CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCEEEEEEECCCCCCHHHHHHHCCCC PLVFPEDHGPHPAYRHEWWYITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQL CEECCCCCCCCCCCCCEEEEEECEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCE WMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWLEDWEVRGTPGAGLAQLQTRL EEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCHHHHHHHH EAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS HCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCC GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGR CCEEEECCCCCCHHHHCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC HRVVTRDDVTLEVLDHWTSPDGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWE EEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH GALRGRGQAAGRPVTAVGYAELTGYVD HHHCCCCCCCCCCEEEEEHEECCCCCC >Mature Secondary Structure AERIARLRRAAACVLLVLVAGCMDPPEGEDAAEQQRITVAGALSGEQDAEGYARALGPR HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCEEEEEEECCCCCCHHHHHHHCCCC PLVFPEDHGPHPAYRHEWWYITGNLFDEDGRHFGFQITFFRFALRPEPSPRPSAWGTNQL CEECCCCCCCCCCCCCEEEEEECEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCCCE WMAHFAVTDTEGETYHHFERLARGALGLAGAQPDPFRVWLEDWEVRGTPGAGLAQLQTRL EEEEEEEECCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCHHHHHHHH EAGGVELVLDLEARKPIVFQGEDGYSQKGDAPGNASYYYTVPRLGAEGRVVVPDGEHAVS HCCCEEEEEEECCCCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCC GTAWIDREWGSSTLSEEQSGWDWFSIQLDDDRELMFYHLRREDGSIDPRSKGGWVDEDGR CCEEEECCCCCCHHHHCCCCCCEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCCC HRVVTRDDVTLEVLDHWTSPDGEATYPARWRLDYPEEDLTLELEPVLADQELRDGFRYWE EEEEECCCCEEEEECCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCHHHHHHHHHHH GALRGRGQAAGRPVTAVGYAELTGYVD HHHCCCCCCCCCCEEEEEHEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA