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The map label for this gene is ydaM [H]

Identifier: 121998088

GI number: 121998088

Start: 1415124

End: 1416803

Strand: Reverse

Name: ydaM [H]

Synonym: Hhal_1304

Alternate gene names: 121998088

Gene position: 1416803-1415124 (Counterclockwise)

Preceding gene: 121998089

Following gene: 121998086

Centisome position: 52.9

GC content: 65.06

Gene sequence:

>1680_bases
ATGGCCCTGTTCCCCGCACGATACCGCCCACGCATCGGCGTCGGCGCACTACTCCTGATCGGCATTGGCTTCCTGCTCGC
CGCCCTCGTCGCCATCCTCACCATCGGCGGCGCGATCCTGCTGGACAGGCAGCAAGCCCACGATCAGCGCGTCAACGCTG
TGCTGGCCGAAGGGGTACGCGCCGAACTGCGAGCCGGCTACGCGGAACTCGAGCGGTTTCTGGAGGCCCGGGAACCCCGC
TATCGGCGGGCCCATGAAAAGGCCCGACAGACCATCGAGGAGCGCGGGATCGAGGAGACCGACCTCGAGGCCCTGGCGAA
GCGGCTCAGCGAGGAACTCGGCGACCCGGTCCACGTCTACATCGTCACCCCGGAGCTGCGCATCAGCCGAACCACCTTCG
AGCCCGACGAAGGATTGGATTTCACTATGGAGGGCATGGAAGATGCGCACGGTATGCTCAAGACTGCGCTCGCCGAGGAC
CAAGTCCTGATCGGGCCACCCACCCTTGAGCTGGTAAGCCGGGAGTTCCGCTTCTATACCTATGGCCCGCTCGGCGATGA
CGGCTACGCCCTGGAACTGGGTCTCAGCCCGGCGTTCATCGATGAAGTGTTCCGAGGCATGGAAGAGCGCTTGGACCAGC
GGGCGCTTTACGAGGGCGAGCTCTTCTTCCTGGTCAATGGCCAATGGCTGATCTCTCTAGGCCTGGACCCGGCTCTGCAA
GAGTTGAACAAGGCCAAGGCCTTCGCCGAGGTCCCGACGCAGCAGGACCAAAAGCTGGAGCGTTTCCAGCGCGCCGTCGG
GCAACGGGGCCTCTACCGGCCAGAAACAACGGACCAACCCCGATCGTATTACGCCTGGCTCAACCGCATTGAACTCGACG
ACGATGGCCACCACTTGGACATCCTCGCCCGGCTGGAAATGCAACACCCCGGTTCTGAGGATGTGCGTAAGATCTGGATT
GCGGTGCTAGTCGGCACGGGCGGACTCGTCGTCCTGGCCACTGCGCTCTTCCACCAGATGGCACGCCGGCTATTGGTCAC
CCCACTGCGACAGACAGCCCAAGCGGCGGCTGCGAGACAGACGGTACCCATCCACGGCCCCGTCCGCTGGATCCACGAAC
TGCGCCTGCTCGCCTGGCAGATCAACCGCGGACTGGCGCGCAGTCGGCGAGAAATCCATGCGCTGGACCAACAGGCGCAA
CACGACCGCCTGACCGGCCTGCTCAATCGCAGCGGCCTCGACCAACAGATCGCCACCCAGGTGGCCCAACACCAAGAGAC
CGGCAAACCCCTGGCGATGCTGCTGATCGATCTGGACCACTTCAAACGGGTCAACGACGAGCACGGCCATGCCGTCGGCG
ATAAGATCCTCCGCCATCTCGCCGACCAGCTGCGTGCCGGGGTCCGCGAGGCCGACATCGTCGGCCGCTGGGGCGGCGAG
GAGTTCGTGATCCTGCTACCCGCCACCGGCCTGGACGGAGCACAGCAGTCAGCCGATAAGCTGCGCAGGGCTCTCGCCGA
CCATCCGGTGCTCAGGCAACACGGGCTGACGGCAAGCTTTGGGGTCAGCGTCCTGGCTAGCGAAGACAGCGACCGCGACC
TCTTCGAGCGCGCCGATTGCGCGCTTTACGCCGCCAAGCACCAGGGCCGCAATCGCGTCTCCATCGTGTCGCCGAGCTGA

Upstream 100 bases:

>100_bases
ACTTTCGAGACAATGATCGTCCGATGATCCACACGGGGCGCCCCTCGGGGCGCCCCGTGTGGCGCGCCCCCCTTTTAGCG
AGCACGGAAGCCCGCCTGCC

Downstream 100 bases:

>100_bases
TGGCACGGACGGATAACCCGCGTCCCTCGTCGTACAGCGCTTTGATCCGATGAATCATGACCCACTCCTTCATGGTCCCC
GCCTTCCGCAGCTTGGTCAG

Product: diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 559; Mature: 558

Protein sequence:

>559_residues
MALFPARYRPRIGVGALLLIGIGFLLAALVAILTIGGAILLDRQQAHDQRVNAVLAEGVRAELRAGYAELERFLEAREPR
YRRAHEKARQTIEERGIEETDLEALAKRLSEELGDPVHVYIVTPELRISRTTFEPDEGLDFTMEGMEDAHGMLKTALAED
QVLIGPPTLELVSREFRFYTYGPLGDDGYALELGLSPAFIDEVFRGMEERLDQRALYEGELFFLVNGQWLISLGLDPALQ
ELNKAKAFAEVPTQQDQKLERFQRAVGQRGLYRPETTDQPRSYYAWLNRIELDDDGHHLDILARLEMQHPGSEDVRKIWI
AVLVGTGGLVVLATALFHQMARRLLVTPLRQTAQAAAARQTVPIHGPVRWIHELRLLAWQINRGLARSRREIHALDQQAQ
HDRLTGLLNRSGLDQQIATQVAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGDKILRHLADQLRAGVREADIVGRWGGE
EFVILLPATGLDGAQQSADKLRRALADHPVLRQHGLTASFGVSVLASEDSDRDLFERADCALYAAKHQGRNRVSIVSPS

Sequences:

>Translated_559_residues
MALFPARYRPRIGVGALLLIGIGFLLAALVAILTIGGAILLDRQQAHDQRVNAVLAEGVRAELRAGYAELERFLEAREPR
YRRAHEKARQTIEERGIEETDLEALAKRLSEELGDPVHVYIVTPELRISRTTFEPDEGLDFTMEGMEDAHGMLKTALAED
QVLIGPPTLELVSREFRFYTYGPLGDDGYALELGLSPAFIDEVFRGMEERLDQRALYEGELFFLVNGQWLISLGLDPALQ
ELNKAKAFAEVPTQQDQKLERFQRAVGQRGLYRPETTDQPRSYYAWLNRIELDDDGHHLDILARLEMQHPGSEDVRKIWI
AVLVGTGGLVVLATALFHQMARRLLVTPLRQTAQAAAARQTVPIHGPVRWIHELRLLAWQINRGLARSRREIHALDQQAQ
HDRLTGLLNRSGLDQQIATQVAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGDKILRHLADQLRAGVREADIVGRWGGE
EFVILLPATGLDGAQQSADKLRRALADHPVLRQHGLTASFGVSVLASEDSDRDLFERADCALYAAKHQGRNRVSIVSPS
>Mature_558_residues
ALFPARYRPRIGVGALLLIGIGFLLAALVAILTIGGAILLDRQQAHDQRVNAVLAEGVRAELRAGYAELERFLEAREPRY
RRAHEKARQTIEERGIEETDLEALAKRLSEELGDPVHVYIVTPELRISRTTFEPDEGLDFTMEGMEDAHGMLKTALAEDQ
VLIGPPTLELVSREFRFYTYGPLGDDGYALELGLSPAFIDEVFRGMEERLDQRALYEGELFFLVNGQWLISLGLDPALQE
LNKAKAFAEVPTQQDQKLERFQRAVGQRGLYRPETTDQPRSYYAWLNRIELDDDGHHLDILARLEMQHPGSEDVRKIWIA
VLVGTGGLVVLATALFHQMARRLLVTPLRQTAQAAAARQTVPIHGPVRWIHELRLLAWQINRGLARSRREIHALDQQAQH
DRLTGLLNRSGLDQQIATQVAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGDKILRHLADQLRAGVREADIVGRWGGEE
FVILLPATGLDGAQQSADKLRRALADHPVLRQHGLTASFGVSVLASEDSDRDLFERADCALYAAKHQGRNRVSIVSPS

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=197, Percent_Identity=38.0710659898477, Blast_Score=123, Evalue=3e-29,
Organism=Escherichia coli, GI1788381, Length=178, Percent_Identity=34.8314606741573, Blast_Score=112, Evalue=6e-26,
Organism=Escherichia coli, GI87082007, Length=187, Percent_Identity=36.8983957219251, Blast_Score=109, Evalue=6e-25,
Organism=Escherichia coli, GI145693134, Length=162, Percent_Identity=36.4197530864198, Blast_Score=105, Evalue=8e-24,
Organism=Escherichia coli, GI1787262, Length=164, Percent_Identity=34.1463414634146, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1786584, Length=335, Percent_Identity=25.9701492537313, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=33.879781420765, Blast_Score=93, Evalue=6e-20,
Organism=Escherichia coli, GI1787816, Length=174, Percent_Identity=33.3333333333333, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787541, Length=163, Percent_Identity=29.4478527607362, Blast_Score=77, Evalue=3e-15,
Organism=Escherichia coli, GI1788085, Length=204, Percent_Identity=29.4117647058824, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=151, Percent_Identity=27.1523178807947, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788956, Length=156, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-12,
Organism=Escherichia coli, GI87081977, Length=174, Percent_Identity=27.0114942528736, Blast_Score=64, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 62646; Mature: 62515

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALFPARYRPRIGVGALLLIGIGFLLAALVAILTIGGAILLDRQQAHDQRVNAVLAEGVR
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHHHHHHHHHH
AELRAGYAELERFLEAREPRYRRAHEKARQTIEERGIEETDLEALAKRLSEELGDPVHVY
HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEE
IVTPELRISRTTFEPDEGLDFTMEGMEDAHGMLKTALAEDQVLIGPPTLELVSREFRFYT
EECCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCEEE
YGPLGDDGYALELGLSPAFIDEVFRGMEERLDQRALYEGELFFLVNGQWLISLGLDPALQ
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHH
ELNKAKAFAEVPTQQDQKLERFQRAVGQRGLYRPETTDQPRSYYAWLNRIELDDDGHHLD
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCEEE
ILARLEMQHPGSEDVRKIWIAVLVGTGGLVVLATALFHQMARRLLVTPLRQTAQAAAARQ
EEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TVPIHGPVRWIHELRLLAWQINRGLARSRREIHALDQQAQHDRLTGLLNRSGLDQQIATQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGDKILRHLADQLRAGVREADIVGRWGGE
HHHHHHCCCCHHHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEECCCCC
EFVILLPATGLDGAQQSADKLRRALADHPVLRQHGLTASFGVSVLASEDSDRDLFERADC
EEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCEEEECCCCCHHHHHHHHH
ALYAAKHQGRNRVSIVSPS
HHHHHHHCCCCEEEEECCC
>Mature Secondary Structure 
ALFPARYRPRIGVGALLLIGIGFLLAALVAILTIGGAILLDRQQAHDQRVNAVLAEGVR
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHEECCHHHHHHHHHHHHHHHHH
AELRAGYAELERFLEAREPRYRRAHEKARQTIEERGIEETDLEALAKRLSEELGDPVHVY
HHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEE
IVTPELRISRTTFEPDEGLDFTMEGMEDAHGMLKTALAEDQVLIGPPTLELVSREFRFYT
EECCCEEEEECCCCCCCCCCEEHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHCCCEEE
YGPLGDDGYALELGLSPAFIDEVFRGMEERLDQRALYEGELFFLVNGQWLISLGLDPALQ
CCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEECCCHHHH
ELNKAKAFAEVPTQQDQKLERFQRAVGQRGLYRPETTDQPRSYYAWLNRIELDDDGHHLD
HHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHEEECCCCCEEE
ILARLEMQHPGSEDVRKIWIAVLVGTGGLVVLATALFHQMARRLLVTPLRQTAQAAAARQ
EEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
TVPIHGPVRWIHELRLLAWQINRGLARSRREIHALDQQAQHDRLTGLLNRSGLDQQIATQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
VAQHQETGKPLAMLLIDLDHFKRVNDEHGHAVGDKILRHLADQLRAGVREADIVGRWGGE
HHHHHHCCCCHHHHHEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHEECCCCC
EFVILLPATGLDGAQQSADKLRRALADHPVLRQHGLTASFGVSVLASEDSDRDLFERADC
EEEEEEECCCCCHHHHHHHHHHHHHHCCCHHHHCCCCHHHCCEEEECCCCCHHHHHHHHH
ALYAAKHQGRNRVSIVSPS
HHHHHHHCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]