| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is 121998084
Identifier: 121998084
GI number: 121998084
Start: 1411057
End: 1411428
Strand: Reverse
Name: 121998084
Synonym: Hhal_1300
Alternate gene names: NA
Gene position: 1411428-1411057 (Counterclockwise)
Preceding gene: 121998086
Following gene: 121998081
Centisome position: 52.7
GC content: 64.52
Gene sequence:
>372_bases ATGAGCCAGCCTTTCGAGTCCCTCAATGTGCTCGGCCAGCCCCTCGCGCCTTGTAGCACTCAGCCTTTGACCGGCTTTTA CCGGGACGGCTGCTGCAATACTGGTCACGAGGACGTTGGAATCCACACGGTCTGCGCCCGGCTGGACGAGGCGTTTCTGA GCTTTACCCGGGAGCAGGGCAACGACCTGACGGCCCCCAATCCGGGCATGGGGTTTCCCGGCCTTCAGCCCGGGGACCGA TGGTGTCGTTGCGCCGGCCGCTGGATGGAGGCCTACCGCGCGGGAGTGGCTCCGATGGTGGATCTGCACGCTAAGCATGC CGAGACCCTGGCCGTGATTGACCTCGATACGCTGAAGGCCTACGCGCTCTGA
Upstream 100 bases:
>100_bases AATGTCGGGGTGCGCATCGACGGGGTGCTTGACTACTTCGGGCGCCGGTGGATGAGCACCCCTGCCGCATGATCCCCCAT CTTCGGAGTTGGAGATCGCA
Downstream 100 bases:
>100_bases GTGAGGGGGCAAAGCCACTGGCTCGGCGCTCCGATTTGCGCCTGTCAACCGGGGTCGACTAGTGCGCCCTGCTGGCCCGC GATTTGGGGCCGGGCGCGCT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 123; Mature: 122
Protein sequence:
>123_residues MSQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQGNDLTAPNPGMGFPGLQPGDR WCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKAYAL
Sequences:
>Translated_123_residues MSQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQGNDLTAPNPGMGFPGLQPGDR WCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKAYAL >Mature_122_residues SQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQGNDLTAPNPGMGFPGLQPGDRW CRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKAYAL
Specific function: Unknown
COG id: COG3651
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13382; Mature: 13251
Theoretical pI: Translated: 5.06; Mature: 5.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 8.1 %Cys+Met (Translated Protein) 4.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 7.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQG CCCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC NDLTAPNPGMGFPGLQPGDRWCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEHHHHHH YAL HCC >Mature Secondary Structure SQPFESLNVLGQPLAPCSTQPLTGFYRDGCCNTGHEDVGIHTVCARLDEAFLSFTREQG CCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC NDLTAPNPGMGFPGLQPGDRWCRCAGRWMEAYRAGVAPMVDLHAKHAETLAVIDLDTLKA CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEEEHHHHHH YAL HCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA