| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is rec2 [H]
Identifier: 121998039
GI number: 121998039
Start: 1355204
End: 1357336
Strand: Reverse
Name: rec2 [H]
Synonym: Hhal_1249
Alternate gene names: 121998039
Gene position: 1357336-1355204 (Counterclockwise)
Preceding gene: 121998041
Following gene: 121998038
Centisome position: 50.68
GC content: 70.32
Gene sequence:
>2133_bases ATGCGAGCAGGATCGCTTGCCTTCGCGGCCGGAATCGTACTGGTCGTGAGCGTGTTACGGGAGCCCCCCGGGGCCTTCTC GGTGGCAGCAGTGGCCGCCTCCGGGGTCGTGTGGGGTCTGCTCGCCCCGCGCGGCTGGCGCTGGCCGGCTGCCGGGCTCC TAGGCTGCGCCTGGGCGCTGCTCAGTGCCTGCTGGCTTTTGGCCCATGAACTTGCCCCTAGCCATGACGGCACCGACGCC TGCCTGGAAGGGCAGGTCGTTTCCGTCCCTGAGATTGAGAGTCACCGTGCTCGCTTCGAGTTCCGGCCTGACGGCGTGCT CGATGGCGAGCTGCTGGAGCCATTGCCGCGACGCATCCGCGTGGATTGGTATGGGGCGACGGAGGAGCCAGCGCCGGGGG AGCGCTGGCAGCTGTGCCTTCGCCTGCGCGCCCCCGATGGATTCCTCAATCCGGAGGGCTTCGATTACCAGCGGTGGCTG TTCCAACGCCGGATCGGCGCGACGGCCTATGTGCGGGAAGCGGAGCAGGCCGAACGCCTGTCCGGCGGCTGGCGAATCGA TAGCGTGCGGACTCGGATCGCCGACGCCATGGCCGAGCGGCTCGGCGATTCGCGGTACCTGGGCTTGGTCCAAGGGCTGG GCGTGGCCGTGCGCGATAGGATCGGCGATGACCAGTGGGAGGTGCTTTCGGTCACCGGGACGGCCCACCTGCTAGCGATC TCGGGGCTGCATATCGGTCTGGTTGCCGGCCTCGCCGGCACGCTGGCCGGCGGACTCTGGCGTGTGGTTCCGTCGCTGGT TCGCCGGGTTCCCGCCCTGATTGCCGGCACCCTGGCCGGGGCGCTGGCTGCAGCCGGTTATGCCGCCCTGGCCGGCTTCA CCCTACCCACTCAGCGCGCGCTGCTCATGGTGCTGGTCTTCGCCGGCGCGCTCCTGCTGCGCCGCCCGTTAAGCCCCTGG CACAGCCTCGCCGTGGCGGCTGCCGCGGTGCTCGCCCTCGACCCCTGGGCGCCGCTGGGGGCGGGGTTCTGGCTCTCCTT CGGGGCGGTGGCGATCATCCTGGCAGCTACAACGGGTCGCCCGATGCAGCGCGGTCCCCTACCATGGCTGCGGATCCAGG TGCTGGTGGGGGTCGGCATGCTACCAGCGACTGCGGTCTGGTTCGGGCACCTGCCGCTTCTCTCGCCGCTGGCCAATCTC GTAGCCGTGCCCTGGGTCAGCGTATCGGTTGTCCCCCTGATCCTGACCGGAGTCGCGCTCCAGCCCGTGGTGCCAGAGTG GTCCGGCGGGTTGTGGCAGGGTGCGGATGCCGCCCTCGGGGTGCTGATGCGTGTGCTCAGCGCGCTGGCCGAGTTCCTCG GTGCCGTTGAGGTGCCCACCCCATCGGTCGGAGCGGTGGCGCTGGCCGCTGTCGGTGTGGCTCTGGTGCTGGCTCCTCGG GCCGTGCCCGGGCGGTGGCTGGCTGGGCCGTTATTGGCGTTGTTGCTCCTGGGGCCCGGCAGTAGCGGAGGCGGTCCCTC CGGCCGCGTGGTGGTCTTCGATACCGGCGGAGGTCTGACCGCTCTGGCCTGCGATGGCCGTCAAGCGGTGGTCTACGGCG GGGGTCCCGGAGGGGGGCTCGACGCGGCGAGCGTTGCTGTCGAGCCGTTTCTCGAAGCCCGGGGGCTGACCCTCAAGGCC TGGCTGGTGCCGCGCGAGCAGGCCCCCTGGGATGGCGCCGTCGCCGAGGCGCGGCAGCGTTGGGACGATGCCGAGTGGCG GGGGGCTGGACAGGATACGACGGCCGAGGCGACGGAGTGGTCCCTGGGGCGGCTGACGCTGCAGGAGACGCCCCTCGGCG ACGAAGAGTGGGGCCTGGATGTCGAGGGAGAGGCGGGTACCGTATCGCTGCGACCGGACCTGGAGAACGACACGAAGGGG TTGGTTGTCGGCGCCGCCGGATGTGACGAGGACCGCCAGGCGTGCAGTGCGGCGGTTGAGTTGAAGGACGGTCGTTTGTT GCGTTCGGACGAGCAGGGCGCGCTGACTTTGATCGAAGACGGCGATGCGTGGCGGGTAGACAGTGAGCTGCAGCGCAGGG GGCGGGTTTACCATCAGGCCAGTCCGGCTGCGTTGGCGCCCGGGATGCTTTAA
Upstream 100 bases:
>100_bases CGCCTGGGCCGCCGTTCGAACGGATGGGTTGGCATCTTTTGGCCGTTCTCGGCTAGCCTGACCCTAAGACACTTATCCGC GCACATGCCAAGGATGGCTG
Downstream 100 bases:
>100_bases AATCCGCCGCCACGCCCACCCGTTCCGGACTGAGCGCCTTGACCGACCCGGGGAGTGATCATGCTTGAGCTCATCCAGGC CGGTGGCTGGCTGATGATAC
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 710; Mature: 710
Protein sequence:
>710_residues MRAGSLAFAAGIVLVVSVLREPPGAFSVAAVAASGVVWGLLAPRGWRWPAAGLLGCAWALLSACWLLAHELAPSHDGTDA CLEGQVVSVPEIESHRARFEFRPDGVLDGELLEPLPRRIRVDWYGATEEPAPGERWQLCLRLRAPDGFLNPEGFDYQRWL FQRRIGATAYVREAEQAERLSGGWRIDSVRTRIADAMAERLGDSRYLGLVQGLGVAVRDRIGDDQWEVLSVTGTAHLLAI SGLHIGLVAGLAGTLAGGLWRVVPSLVRRVPALIAGTLAGALAAAGYAALAGFTLPTQRALLMVLVFAGALLLRRPLSPW HSLAVAAAAVLALDPWAPLGAGFWLSFGAVAIILAATTGRPMQRGPLPWLRIQVLVGVGMLPATAVWFGHLPLLSPLANL VAVPWVSVSVVPLILTGVALQPVVPEWSGGLWQGADAALGVLMRVLSALAEFLGAVEVPTPSVGAVALAAVGVALVLAPR AVPGRWLAGPLLALLLLGPGSSGGGPSGRVVVFDTGGGLTALACDGRQAVVYGGGPGGGLDAASVAVEPFLEARGLTLKA WLVPREQAPWDGAVAEARQRWDDAEWRGAGQDTTAEATEWSLGRLTLQETPLGDEEWGLDVEGEAGTVSLRPDLENDTKG LVVGAAGCDEDRQACSAAVELKDGRLLRSDEQGALTLIEDGDAWRVDSELQRRGRVYHQASPAALAPGML
Sequences:
>Translated_710_residues MRAGSLAFAAGIVLVVSVLREPPGAFSVAAVAASGVVWGLLAPRGWRWPAAGLLGCAWALLSACWLLAHELAPSHDGTDA CLEGQVVSVPEIESHRARFEFRPDGVLDGELLEPLPRRIRVDWYGATEEPAPGERWQLCLRLRAPDGFLNPEGFDYQRWL FQRRIGATAYVREAEQAERLSGGWRIDSVRTRIADAMAERLGDSRYLGLVQGLGVAVRDRIGDDQWEVLSVTGTAHLLAI SGLHIGLVAGLAGTLAGGLWRVVPSLVRRVPALIAGTLAGALAAAGYAALAGFTLPTQRALLMVLVFAGALLLRRPLSPW HSLAVAAAAVLALDPWAPLGAGFWLSFGAVAIILAATTGRPMQRGPLPWLRIQVLVGVGMLPATAVWFGHLPLLSPLANL VAVPWVSVSVVPLILTGVALQPVVPEWSGGLWQGADAALGVLMRVLSALAEFLGAVEVPTPSVGAVALAAVGVALVLAPR AVPGRWLAGPLLALLLLGPGSSGGGPSGRVVVFDTGGGLTALACDGRQAVVYGGGPGGGLDAASVAVEPFLEARGLTLKA WLVPREQAPWDGAVAEARQRWDDAEWRGAGQDTTAEATEWSLGRLTLQETPLGDEEWGLDVEGEAGTVSLRPDLENDTKG LVVGAAGCDEDRQACSAAVELKDGRLLRSDEQGALTLIEDGDAWRVDSELQRRGRVYHQASPAALAPGML >Mature_710_residues MRAGSLAFAAGIVLVVSVLREPPGAFSVAAVAASGVVWGLLAPRGWRWPAAGLLGCAWALLSACWLLAHELAPSHDGTDA CLEGQVVSVPEIESHRARFEFRPDGVLDGELLEPLPRRIRVDWYGATEEPAPGERWQLCLRLRAPDGFLNPEGFDYQRWL FQRRIGATAYVREAEQAERLSGGWRIDSVRTRIADAMAERLGDSRYLGLVQGLGVAVRDRIGDDQWEVLSVTGTAHLLAI SGLHIGLVAGLAGTLAGGLWRVVPSLVRRVPALIAGTLAGALAAAGYAALAGFTLPTQRALLMVLVFAGALLLRRPLSPW HSLAVAAAAVLALDPWAPLGAGFWLSFGAVAIILAATTGRPMQRGPLPWLRIQVLVGVGMLPATAVWFGHLPLLSPLANL VAVPWVSVSVVPLILTGVALQPVVPEWSGGLWQGADAALGVLMRVLSALAEFLGAVEVPTPSVGAVALAAVGVALVLAPR AVPGRWLAGPLLALLLLGPGSSGGGPSGRVVVFDTGGGLTALACDGRQAVVYGGGPGGGLDAASVAVEPFLEARGLTLKA WLVPREQAPWDGAVAEARQRWDDAEWRGAGQDTTAEATEWSLGRLTLQETPLGDEEWGLDVEGEAGTVSLRPDLENDTKG LVVGAAGCDEDRQACSAAVELKDGRLLRSDEQGALTLIEDGDAWRVDSELQRRGRVYHQASPAALAPGML
Specific function: Might contribute to transformation as a member of a membrane-bound pore complex at the base of the transformasome. It could directly interact with transforming DNA during translocation indirectly by participating in the assembly of the pore [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI87081801, Length=700, Percent_Identity=24.2857142857143, Blast_Score=109, Evalue=5e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 74466; Mature: 74466
Theoretical pI: Translated: 4.96; Mature: 4.96
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRAGSLAFAAGIVLVVSVLREPPGAFSVAAVAASGVVWGLLAPRGWRWPAAGLLGCAWAL CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH LSACWLLAHELAPSHDGTDACLEGQVVSVPEIESHRARFEFRPDGVLDGELLEPLPRRIR HHHHHHHHHHHCCCCCCCCHHHCCCEECCCCCCCCCCEEEECCCCCCCCHHHHCCCHHEE VDWYGATEEPAPGERWQLCLRLRAPDGFLNPEGFDYQRWLFQRRIGATAYVREAEQAERL EEEECCCCCCCCCHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH SGGWRIDSVRTRIADAMAERLGDSRYLGLVQGLGVAVRDRIGDDQWEVLSVTGTAHLLAI CCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCEEEEEECCCEEEEEE SGLHIGLVAGLAGTLAGGLWRVVPSLVRRVPALIAGTLAGALAAAGYAALAGFTLPTQRA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LLMVLVFAGALLLRRPLSPWHSLAVAAAAVLALDPWAPLGAGFWLSFGAVAIILAATTGR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCC PMQRGPLPWLRIQVLVGVGMLPATAVWFGHLPLLSPLANLVAVPWVSVSVVPLILTGVAL CCCCCCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH QPVVPEWSGGLWQGADAALGVLMRVLSALAEFLGAVEVPTPSVGAVALAAVGVALVLAPR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC AVPGRWLAGPLLALLLLGPGSSGGGPSGRVVVFDTGGGLTALACDGRQAVVYGGGPGGGL CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCC DAASVAVEPFLEARGLTLKAWLVPREQAPWDGAVAEARQRWDDAEWRGAGQDTTAEATEW CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC SLGRLTLQETPLGDEEWGLDVEGEAGTVSLRPDLENDTKGLVVGAAGCDEDRQACSAAVE CCCEEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHE LKDGRLLRSDEQGALTLIEDGDAWRVDSELQRRGRVYHQASPAALAPGML ECCCCEEECCCCCCEEEEECCCCEECCHHHHHCCCCEECCCCCCCCCCCC >Mature Secondary Structure MRAGSLAFAAGIVLVVSVLREPPGAFSVAAVAASGVVWGLLAPRGWRWPAAGLLGCAWAL CCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH LSACWLLAHELAPSHDGTDACLEGQVVSVPEIESHRARFEFRPDGVLDGELLEPLPRRIR HHHHHHHHHHHCCCCCCCCHHHCCCEECCCCCCCCCCEEEECCCCCCCCHHHHCCCHHEE VDWYGATEEPAPGERWQLCLRLRAPDGFLNPEGFDYQRWLFQRRIGATAYVREAEQAERL EEEECCCCCCCCCHHEEEEEEEECCCCCCCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHH SGGWRIDSVRTRIADAMAERLGDSRYLGLVQGLGVAVRDRIGDDQWEVLSVTGTAHLLAI CCCCEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHCCCCCEEEEEECCCEEEEEE SGLHIGLVAGLAGTLAGGLWRVVPSLVRRVPALIAGTLAGALAAAGYAALAGFTLPTQRA CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH LLMVLVFAGALLLRRPLSPWHSLAVAAAAVLALDPWAPLGAGFWLSFGAVAIILAATTGR HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEECCCC PMQRGPLPWLRIQVLVGVGMLPATAVWFGHLPLLSPLANLVAVPWVSVSVVPLILTGVAL CCCCCCCCHHHHHHHHHCCCHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH QPVVPEWSGGLWQGADAALGVLMRVLSALAEFLGAVEVPTPSVGAVALAAVGVALVLAPR CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCC AVPGRWLAGPLLALLLLGPGSSGGGPSGRVVVFDTGGGLTALACDGRQAVVYGGGPGGGL CCCCCHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEEEEEECCCEEEEEECCCCCCC DAASVAVEPFLEARGLTLKAWLVPREQAPWDGAVAEARQRWDDAEWRGAGQDTTAEATEW CHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCC SLGRLTLQETPLGDEEWGLDVEGEAGTVSLRPDLENDTKGLVVGAAGCDEDRQACSAAVE CCCEEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCCCEEEEEECCCCHHHHHHHHHHE LKDGRLLRSDEQGALTLIEDGDAWRVDSELQRRGRVYHQASPAALAPGML ECCCCEEECCCCCCEEEEECCCCEECCHHHHHCCCCEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8063112; 7542800 [H]