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The map label for this gene is exbD2 [H]

Identifier: 121998037

GI number: 121998037

Start: 1354092

End: 1354514

Strand: Reverse

Name: exbD2 [H]

Synonym: Hhal_1247

Alternate gene names: 121998037

Gene position: 1354514-1354092 (Counterclockwise)

Preceding gene: 121998038

Following gene: 121998036

Centisome position: 50.57

GC content: 64.78

Gene sequence:

>423_bases
TTGAACCTGCGGCGCCGGCAACGCCGGGACGAACCGGAGCTCAATCTGACGCCGTTGATCGACGTCGTCTTCCTGTTGCT
GATCTTCTTCATGGTGACCACGACGTTCGTCGATCAGGTCGGCCTCGATATCACGCTGCCCGAGGCCGAGCAGGAGACCG
AAGAGGCCCAGCCTCAGCTGCTCGAGATCGGCATCAGTGCCGAAGGCGAGTATTTCGTTGACGGCAATCCGCTGGTAAAT
CGGGAGATGAACACCCTGGTCCGGGCGCTGGAGGAGGCCCTAGAGGCCGGCGAAGTCGCCGGTATCGTCGTGCGCGCCGA
CGCCGATGCCCCGCATCGCGCGGTGGTTCGCGCCCTCGATGGCGCCGGCCGAGTCGGCATCGACCGCGTTTCGATCGCCA
CCACCCGATCCGACGACCTTTAG

Upstream 100 bases:

>100_bases
GCCTGGTCGACGAACGGGTAGTCGAAATGGAGCAGGAGGCGATGCTTCTGCTCGAGGCCAGCGATCCTGAGCGTCCGGTA
CAGCGAGCCCGGGGGGCCGC

Downstream 100 bases:

>100_bases
GGAGACGGTTTGAGTACGCAAGCACAGGCTCCCGGCCAGCCCTTACCGGATGGCGCACAGGCGCTCAAACAGGACCGCAG
AACCTGGCCGACGTTCCGCC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MNLRRRQRRDEPELNLTPLIDVVFLLLIFFMVTTTFVDQVGLDITLPEAEQETEEAQPQLLEIGISAEGEYFVDGNPLVN
REMNTLVRALEEALEAGEVAGIVVRADADAPHRAVVRALDGAGRVGIDRVSIATTRSDDL

Sequences:

>Translated_140_residues
MNLRRRQRRDEPELNLTPLIDVVFLLLIFFMVTTTFVDQVGLDITLPEAEQETEEAQPQLLEIGISAEGEYFVDGNPLVN
REMNTLVRALEEALEAGEVAGIVVRADADAPHRAVVRALDGAGRVGIDRVSIATTRSDDL
>Mature_140_residues
MNLRRRQRRDEPELNLTPLIDVVFLLLIFFMVTTTFVDQVGLDITLPEAEQETEEAQPQLLEIGISAEGEYFVDGNPLVN
REMNTLVRALEEALEAGEVAGIVVRADADAPHRAVVRALDGAGRVGIDRVSIATTRSDDL

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15471; Mature: 15471

Theoretical pI: Translated: 4.10; Mature: 4.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLRRRQRRDEPELNLTPLIDVVFLLLIFFMVTTTFVDQVGLDITLPEAEQETEEAQPQL
CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHCCCCE
LEIGISAEGEYFVDGNPLVNREMNTLVRALEEALEAGEVAGIVVRADADAPHRAVVRALD
EEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHC
GAGRVGIDRVSIATTRSDDL
CCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MNLRRRQRRDEPELNLTPLIDVVFLLLIFFMVTTTFVDQVGLDITLPEAEQETEEAQPQL
CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHCCCCE
LEIGISAEGEYFVDGNPLVNREMNTLVRALEEALEAGEVAGIVVRADADAPHRAVVRALD
EEEECCCCCCEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEEECCCCHHHHHHHHHC
GAGRVGIDRVSIATTRSDDL
CCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9781885; 10952301 [H]