Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is yaiL [H]

Identifier: 121997957

GI number: 121997957

Start: 1275094

End: 1275642

Strand: Reverse

Name: yaiL [H]

Synonym: Hhal_1167

Alternate gene names: 121997957

Gene position: 1275642-1275094 (Counterclockwise)

Preceding gene: 121997958

Following gene: 121997956

Centisome position: 47.63

GC content: 68.67

Gene sequence:

>549_bases
ATGGCGAACTCGTTGCATGACCAGCTCCTCAAGGCGGGGCTGGTGGATGAGAAGAAGGTCAAGCAGGCCCGGCGGGCCAC
GCCCAAGAAGAACAAGAAGAAGAAGGGCAAGGCCGCCGCCGAGCAGCCTGCCGAGCCCAGCGCGGCCGAGCGGGCCCGCC
GTGAGGAGGCGGAACGTTCCCGGGCGCTCAACCGGCAGCGGCAGGCCGAGGCCGAGCGCAAGGCCGTGGAGGCCCAGATC
CGTCAGCTCATCGAGACCCACCGCCAGGGGCGCGACGGAGCCGAGCTGCCCTACAACTTCCAGCACGGCAGCGTCATCCG
CCAGCTGCTCGTGACCCCCGACCAGCGCGATCGCTTGGCTCAGGGGCGTCTGGCCATCGTCTGCCAGGAGGGGAGCTACG
AGCTGGTGAGCCGCGAGGGGGCCGACAAGATCGCTGAACGCGACCCTGCGCGGGTGGTGGTCTGTAACGATCCTGCGGCC
TCCGCCCAGGGTCCGGACGATGAGGACCCCTATGCCGGTTATGAGGTCCCCGACGATCTGATGTGGTAG

Upstream 100 bases:

>100_bases
ACGCCCTGGCGCAGCTCGAGCGCGGGGCGCTGTGGCTCGATTTCATCGGGCAGCGTATCCTGCGCCAGCTCAACGGCGGT
CGACTTCCGCGGGAGTAAAG

Downstream 100 bases:

>100_bases
CCGGTCGGTACGACCCTGCTGCGACCGAACAAGCAAACGCCTGCCTCTCACCCTCCAGGCGGGTCGGGGAAACGCCGCTC
ACTCTCTTCGGCAATGATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 182; Mature: 181

Protein sequence:

>182_residues
MANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERSRALNRQRQAEAERKAVEAQI
RQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLAQGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAA
SAQGPDDEDPYAGYEVPDDLMW

Sequences:

>Translated_182_residues
MANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERSRALNRQRQAEAERKAVEAQI
RQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLAQGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAA
SAQGPDDEDPYAGYEVPDDLMW
>Mature_181_residues
ANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERSRALNRQRQAEAERKAVEAQIR
QLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLAQGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAAS
AQGPDDEDPYAGYEVPDDLMW

Specific function: Unknown

COG id: COG3122

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081724, Length=185, Percent_Identity=37.2972972972973, Blast_Score=111, Evalue=3e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018636 [H]

Pfam domain/function: PF09831 DUF2058 [H]

EC number: NA

Molecular weight: Translated: 20360; Mature: 20229

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERS
CCCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHH
RALNRQRQAEAERKAVEAQIRQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
QGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAASAQGPDDEDPYAGYEVPDDL
CCCEEEEECCCCHHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHC
MW
CC
>Mature Secondary Structure 
ANSLHDQLLKAGLVDEKKVKQARRATPKKNKKKKGKAAAEQPAEPSAAERARREEAERS
CCHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHCCHHHCCCCCCHHHHHHHHHHHHHH
RALNRQRQAEAERKAVEAQIRQLIETHRQGRDGAELPYNFQHGSVIRQLLVTPDQRDRLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
QGRLAIVCQEGSYELVSREGADKIAERDPARVVVCNDPAASAQGPDDEDPYAGYEVPDDL
CCCEEEEECCCCHHHHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHC
MW
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]