| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997941
Identifier: 121997941
GI number: 121997941
Start: 1250925
End: 1252103
Strand: Reverse
Name: 121997941
Synonym: Hhal_1150
Alternate gene names: NA
Gene position: 1252103-1250925 (Counterclockwise)
Preceding gene: 121997942
Following gene: 121997940
Centisome position: 46.75
GC content: 64.46
Gene sequence:
>1179_bases ATGCCCAACTACGCCGATATGCTCCTCAGGCACGAGGAGAGCAGCGGCTTTATCAAGGCTCGCAGGGCCCCTCTGGGGTT TACCGACGGCCGTGATGAGGCGTGGTTACGTGACCTTTTGGCCGACAACCCGGATGTTCTGCCGATCGAGGAGATCGACC CGTCCTTTGCGCCGTTAGCCCCCCTCTGCACCGAGCTTGAGACCGAGGCGGGTCCGGTAGACGCCGCCTTTATCAATCCC TCCGGCCGGCTGACCCTGGTGGAGTGCAAGCTCTGGCGCAACCCGGAAGCGCGGCGAAAGGTGATCGCGCAGATCCTCGA TTACGCCCGGGCGATTGCCCAATGGGACTATGCCGACCTCCAGCGCCGGGTGGCCTCCGCCTCCGGAGACAAGGCGAATC GACCGTTTGAGGCCGCCCGGCAGCTGCAAACGGACCTGGACGAGGCCGTCTTCGTCGATGCAACGGCCCGCGCCCTGCGA GAGGGGCGATTCCTGTTGCTGATCGCAGGGGATGGTATCCGTGAAGGGGTCAGCGGGATGACCGACCTGATCAGCCGCAA TGCGGCCCTTGGCTTCAGCTTTGGCCTCGTCGAGGTCGCCCTGTATCAGTTCGGCGAACAGGGGCTCGCGGTCCAGCCGC GTGTCATCGCCAAGACCCACACGATCGAGCGAACCTTTGTGGTCATGCAAGGTCCCAATGGCGCCGTCCTTCAAGAGGGT GAGGGCGACGCGGACCAACCGTCGCAATCGCGCCCTACCGAGGACGAGGTGGCTTGGTGGGAGCCGTTAACCCGAATCGC CTTCAATGACCCCGAGCAGGAGCCACCGGTCTACCGCCCACGCAACCACGTGAGGGTCGCCATGCCGTCAACCGGGATGT GGGTGACGGCGTTTCGTGCCATGAGCCATGGCATCTGCGGCGTATTTCTGGGCGGTAGGAAGCCCGAGCGCCTCGAGGTG CTCGACGCCCTGAACGAGGAGCGCGAGCAGATCCTAAGCGAACTCCCTGAGGGGACGCACCAGGGCATGGACGGCACTGA AGAGCGCCCCGGATTTGCCATCTACGCCCAGCTCGACGACTTCGCCAGCGACGAGGCGTGCCGCGCCTGGCTGTCGGAGC AGCTTAATCGGTTCGTGAATGCGTTTCGTCCGCGGCTCAAGCGTGTGGAGAAACGCTGA
Upstream 100 bases:
>100_bases GCGCGACTTCGCGCTGCTGATCCTGCAGCTGCTGTCGATGCGGGGGGAGCCCGCGTCGCGGCGCGTGTGATTCGGCCACT GAAAAGGAGGTACGGGGCCG
Downstream 100 bases:
>100_bases TGGTGTTGCGCCTGGTTCTGGGTGGAAGCTTTATGCGGCGGAAGCGCAGGATAATGCGTTACGCCGCGGAACCGCCGCAT AACGCGCATCGAAAGGTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 392; Mature: 391
Protein sequence:
>392_residues MPNYADMLLRHEESSGFIKARRAPLGFTDGRDEAWLRDLLADNPDVLPIEEIDPSFAPLAPLCTELETEAGPVDAAFINP SGRLTLVECKLWRNPEARRKVIAQILDYARAIAQWDYADLQRRVASASGDKANRPFEAARQLQTDLDEAVFVDATARALR EGRFLLLIAGDGIREGVSGMTDLISRNAALGFSFGLVEVALYQFGEQGLAVQPRVIAKTHTIERTFVVMQGPNGAVLQEG EGDADQPSQSRPTEDEVAWWEPLTRIAFNDPEQEPPVYRPRNHVRVAMPSTGMWVTAFRAMSHGICGVFLGGRKPERLEV LDALNEEREQILSELPEGTHQGMDGTEERPGFAIYAQLDDFASDEACRAWLSEQLNRFVNAFRPRLKRVEKR
Sequences:
>Translated_392_residues MPNYADMLLRHEESSGFIKARRAPLGFTDGRDEAWLRDLLADNPDVLPIEEIDPSFAPLAPLCTELETEAGPVDAAFINP SGRLTLVECKLWRNPEARRKVIAQILDYARAIAQWDYADLQRRVASASGDKANRPFEAARQLQTDLDEAVFVDATARALR EGRFLLLIAGDGIREGVSGMTDLISRNAALGFSFGLVEVALYQFGEQGLAVQPRVIAKTHTIERTFVVMQGPNGAVLQEG EGDADQPSQSRPTEDEVAWWEPLTRIAFNDPEQEPPVYRPRNHVRVAMPSTGMWVTAFRAMSHGICGVFLGGRKPERLEV LDALNEEREQILSELPEGTHQGMDGTEERPGFAIYAQLDDFASDEACRAWLSEQLNRFVNAFRPRLKRVEKR >Mature_391_residues PNYADMLLRHEESSGFIKARRAPLGFTDGRDEAWLRDLLADNPDVLPIEEIDPSFAPLAPLCTELETEAGPVDAAFINPS GRLTLVECKLWRNPEARRKVIAQILDYARAIAQWDYADLQRRVASASGDKANRPFEAARQLQTDLDEAVFVDATARALRE GRFLLLIAGDGIREGVSGMTDLISRNAALGFSFGLVEVALYQFGEQGLAVQPRVIAKTHTIERTFVVMQGPNGAVLQEGE GDADQPSQSRPTEDEVAWWEPLTRIAFNDPEQEPPVYRPRNHVRVAMPSTGMWVTAFRAMSHGICGVFLGGRKPERLEVL DALNEEREQILSELPEGTHQGMDGTEERPGFAIYAQLDDFASDEACRAWLSEQLNRFVNAFRPRLKRVEKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43815; Mature: 43684
Theoretical pI: Translated: 4.64; Mature: 4.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPNYADMLLRHEESSGFIKARRAPLGFTDGRDEAWLRDLLADNPDVLPIEEIDPSFAPLA CCCHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCHH PLCTELETEAGPVDAAFINPSGRLTLVECKLWRNPEARRKVIAQILDYARAIAQWDYADL HHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHH QRRVASASGDKANRPFEAARQLQTDLDEAVFVDATARALREGRFLLLIAGDGIREGVSGM HHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHCCCEEEEEECCCHHHHHHHH TDLISRNAALGFSFGLVEVALYQFGEQGLAVQPRVIAKTHTIERTFVVMQGPNGAVLQEG HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEEEEEEEECCCCCEEECC EGDADQPSQSRPTEDEVAWWEPLTRIAFNDPEQEPPVYRPRNHVRVAMPSTGMWVTAFRA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHH MSHGICGVFLGGRKPERLEVLDALNEEREQILSELPEGTHQGMDGTEERPGFAIYAQLDD HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC FASDEACRAWLSEQLNRFVNAFRPRLKRVEKR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PNYADMLLRHEESSGFIKARRAPLGFTDGRDEAWLRDLLADNPDVLPIEEIDPSFAPLA CCHHHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHCCCCCCCHH PLCTELETEAGPVDAAFINPSGRLTLVECKLWRNPEARRKVIAQILDYARAIAQWDYADL HHHHHHHCCCCCCCEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHH QRRVASASGDKANRPFEAARQLQTDLDEAVFVDATARALREGRFLLLIAGDGIREGVSGM HHHHHHCCCCCCCCCHHHHHHHHHHHHHHEEHHHHHHHHHCCCEEEEEECCCHHHHHHHH TDLISRNAALGFSFGLVEVALYQFGEQGLAVQPRVIAKTHTIERTFVVMQGPNGAVLQEG HHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHEEEEEEEEEEECCCCCEEECC EGDADQPSQSRPTEDEVAWWEPLTRIAFNDPEQEPPVYRPRNHVRVAMPSTGMWVTAFRA CCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHH MSHGICGVFLGGRKPERLEVLDALNEEREQILSELPEGTHQGMDGTEERPGFAIYAQLDD HHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCC FASDEACRAWLSEQLNRFVNAFRPRLKRVEKR CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA