| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997908
Identifier: 121997908
GI number: 121997908
Start: 1212585
End: 1213748
Strand: Reverse
Name: 121997908
Synonym: Hhal_1117
Alternate gene names: NA
Gene position: 1213748-1212585 (Counterclockwise)
Preceding gene: 121997909
Following gene: 121997907
Centisome position: 45.32
GC content: 70.36
Gene sequence:
>1164_bases ATGGATAGACCCAGCTACGAGGGCAGCGGCCTGGTCAACCTGATGGCGTCCCTGGGCCGTGCCTTCGGGGCGGCGTCCAG CCACTATCCGGCCCTGGATCCTGAGCCGGAGCTGGGGCTGGAGGAGGCGCGCACGGTCATCCTCTGGATCATGGATGGCC TCGGCGATCACTACCTGGCCAGGCAGCCGGGCAGCAGCCTGGCGCGGGATCGGGTGCGGGTGCTGACCTCGGTCTTCCCC GCCACCACCTCGGCGGCCTTGACCAGCATCATTACCGGGCGTCCGCCGCGGGGGCACGGGGTCACCGGCTGGTTTATGTA CGTCCACGAGCTGGGGGCGGTCACCGCCTGGCTCCCCTTCGGTCCGCGGGTGGGCAAGGGGCAGTGGTCCAGCATCGAGC CGGAGAGCGCCGAGCTGCTGCAGCGCGACCCGATCTGGGATCGGTTTCAGGCCGAGACGCACGTCGTTCAACCCTCCTGG CTGGTCGACACGCCGTATAGCCGGGCGGTCACCGGGCGCTATGCCCGCCGGCACGGCTATCAGGGGTTGGACGAGCTGCG CGAGGTGCTGGTGCGCATCGCCCGCGAGCCCGGTCGGCAGCGACGGTTCGTCTACGCCTACTGGCCGGACCTGGATACGC TGAGCCACCAGCACGGTGTCGACAGTGCAGCGGTGCGCGACCAGTTCCGCTCCATCGACATCGCCTGGCAGCGGCTGCTC GATGGCCTTCAGGGCACCGACACCGTGATCCTCGGCACCGCCGACCACGGCCTGATCGATACTGCCCCCGAGCGGACCCT CTATCTGGGGGACCATCCGGAGTTGGCCGAGATGCTGGCCCTGCCGCTGTGCGGCGAGCCCCGGGCGGCCTACTGCTACC TGCGTCCGGGCACCGAACTCGACTTCCAGTCCTATTGCCGCGAGCGCCTGGGTACGGTCTGCCAGGTCGCCCGCTCCGAG GAGCTCCTGGCGGCGGGTTGGTTCGGGCCCATGCCGGAACACCCGAAGCTGCGCCGGCGGATCGGTGATTGGGTGCTGCT GCCGGCCGATGGCTGGGTGATCAAGGACCGGCTGGTGGGCGAGGGGCGCTTCGCCCAGGTGGGGGTGCACGGCGGGGCGT CGGCGAGCGAGCAGTGGGTGCCGCTGATTGCCGCACGGCCGTGA
Upstream 100 bases:
>100_bases CAGATGGGCGGCGAGATCGGTTTCTCCAGCGCGCCCGGCGTGGGGTCGGTCTTCTGGGTCGATCTGCCCGGCGTGGTGAC CGCGGACGAGGTCTCGAGCG
Downstream 100 bases:
>100_bases TAACATCACCGGGATGGAATCCCTGCTCTACACCGCCGAGGTCCCCTTCGAGGCCGCGCGCCGCGACGGCCGGGGCTGGC ACGGTCACTCCTTTCGGCTG
Product: type I phosphodiesterase/nucleotide pyrophosphatase
Products: NA
Alternate protein names: Phosphodiesterase; Type I Phosphodiesterase / Nucleotide Pyrophosphatase; AP Superfamily Protein; Nucleotide Pyrophosphatase; Phosphodiesterase I/Nucleotide Pyrophosphatase; Phosphodiesterase Protein; Protein Of AP Superfamily; LOW QUALITY PROTEIN Phosphodiesterase; Phosphodiesterase/Nucleotide Pyrophosphatase
Number of amino acids: Translated: 387; Mature: 387
Protein sequence:
>387_residues MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLARQPGSSLARDRVRVLTSVFP ATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPFGPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSW LVDTPYSRAVTGRYARRHGYQGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTELDFQSYCRERLGTVCQVARSE ELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVGEGRFAQVGVHGGASASEQWVPLIAARP
Sequences:
>Translated_387_residues MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLARQPGSSLARDRVRVLTSVFP ATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPFGPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSW LVDTPYSRAVTGRYARRHGYQGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTELDFQSYCRERLGTVCQVARSE ELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVGEGRFAQVGVHGGASASEQWVPLIAARP >Mature_387_residues MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLARQPGSSLARDRVRVLTSVFP ATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPFGPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSW LVDTPYSRAVTGRYARRHGYQGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTELDFQSYCRERLGTVCQVARSE ELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVGEGRFAQVGVHGGASASEQWVPLIAARP
Specific function: Unknown
COG id: COG1524
COG function: function code R; Uncharacterized proteins of the AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43020; Mature: 43020
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLA CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCHHH RQPGSSLARDRVRVLTSVFPATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPF CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEECCC GPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSWLVDTPYSRAVTGRYARRHGY CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHCCC QGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL CCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTEL CCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC DFQSYCRERLGTVCQVARSEELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVG CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCCCEEEECEEEC EGRFAQVGVHGGASASEQWVPLIAARP CCCEEEEECCCCCCCCCCCEEEEECCC >Mature Secondary Structure MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLA CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCHHH RQPGSSLARDRVRVLTSVFPATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPF CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEECCC GPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSWLVDTPYSRAVTGRYARRHGY CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHCCC QGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL CCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTEL CCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC DFQSYCRERLGTVCQVARSEELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVG CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCCCEEEECEEEC EGRFAQVGVHGGASASEQWVPLIAARP CCCEEEEECCCCCCCCCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA