Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

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The map label for this gene is 121997908

Identifier: 121997908

GI number: 121997908

Start: 1212585

End: 1213748

Strand: Reverse

Name: 121997908

Synonym: Hhal_1117

Alternate gene names: NA

Gene position: 1213748-1212585 (Counterclockwise)

Preceding gene: 121997909

Following gene: 121997907

Centisome position: 45.32

GC content: 70.36

Gene sequence:

>1164_bases
ATGGATAGACCCAGCTACGAGGGCAGCGGCCTGGTCAACCTGATGGCGTCCCTGGGCCGTGCCTTCGGGGCGGCGTCCAG
CCACTATCCGGCCCTGGATCCTGAGCCGGAGCTGGGGCTGGAGGAGGCGCGCACGGTCATCCTCTGGATCATGGATGGCC
TCGGCGATCACTACCTGGCCAGGCAGCCGGGCAGCAGCCTGGCGCGGGATCGGGTGCGGGTGCTGACCTCGGTCTTCCCC
GCCACCACCTCGGCGGCCTTGACCAGCATCATTACCGGGCGTCCGCCGCGGGGGCACGGGGTCACCGGCTGGTTTATGTA
CGTCCACGAGCTGGGGGCGGTCACCGCCTGGCTCCCCTTCGGTCCGCGGGTGGGCAAGGGGCAGTGGTCCAGCATCGAGC
CGGAGAGCGCCGAGCTGCTGCAGCGCGACCCGATCTGGGATCGGTTTCAGGCCGAGACGCACGTCGTTCAACCCTCCTGG
CTGGTCGACACGCCGTATAGCCGGGCGGTCACCGGGCGCTATGCCCGCCGGCACGGCTATCAGGGGTTGGACGAGCTGCG
CGAGGTGCTGGTGCGCATCGCCCGCGAGCCCGGTCGGCAGCGACGGTTCGTCTACGCCTACTGGCCGGACCTGGATACGC
TGAGCCACCAGCACGGTGTCGACAGTGCAGCGGTGCGCGACCAGTTCCGCTCCATCGACATCGCCTGGCAGCGGCTGCTC
GATGGCCTTCAGGGCACCGACACCGTGATCCTCGGCACCGCCGACCACGGCCTGATCGATACTGCCCCCGAGCGGACCCT
CTATCTGGGGGACCATCCGGAGTTGGCCGAGATGCTGGCCCTGCCGCTGTGCGGCGAGCCCCGGGCGGCCTACTGCTACC
TGCGTCCGGGCACCGAACTCGACTTCCAGTCCTATTGCCGCGAGCGCCTGGGTACGGTCTGCCAGGTCGCCCGCTCCGAG
GAGCTCCTGGCGGCGGGTTGGTTCGGGCCCATGCCGGAACACCCGAAGCTGCGCCGGCGGATCGGTGATTGGGTGCTGCT
GCCGGCCGATGGCTGGGTGATCAAGGACCGGCTGGTGGGCGAGGGGCGCTTCGCCCAGGTGGGGGTGCACGGCGGGGCGT
CGGCGAGCGAGCAGTGGGTGCCGCTGATTGCCGCACGGCCGTGA

Upstream 100 bases:

>100_bases
CAGATGGGCGGCGAGATCGGTTTCTCCAGCGCGCCCGGCGTGGGGTCGGTCTTCTGGGTCGATCTGCCCGGCGTGGTGAC
CGCGGACGAGGTCTCGAGCG

Downstream 100 bases:

>100_bases
TAACATCACCGGGATGGAATCCCTGCTCTACACCGCCGAGGTCCCCTTCGAGGCCGCGCGCCGCGACGGCCGGGGCTGGC
ACGGTCACTCCTTTCGGCTG

Product: type I phosphodiesterase/nucleotide pyrophosphatase

Products: NA

Alternate protein names: Phosphodiesterase; Type I Phosphodiesterase / Nucleotide Pyrophosphatase; AP Superfamily Protein; Nucleotide Pyrophosphatase; Phosphodiesterase I/Nucleotide Pyrophosphatase; Phosphodiesterase Protein; Protein Of AP Superfamily; LOW QUALITY PROTEIN Phosphodiesterase; Phosphodiesterase/Nucleotide Pyrophosphatase

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLARQPGSSLARDRVRVLTSVFP
ATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPFGPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSW
LVDTPYSRAVTGRYARRHGYQGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL
DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTELDFQSYCRERLGTVCQVARSE
ELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVGEGRFAQVGVHGGASASEQWVPLIAARP

Sequences:

>Translated_387_residues
MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLARQPGSSLARDRVRVLTSVFP
ATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPFGPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSW
LVDTPYSRAVTGRYARRHGYQGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL
DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTELDFQSYCRERLGTVCQVARSE
ELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVGEGRFAQVGVHGGASASEQWVPLIAARP
>Mature_387_residues
MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLARQPGSSLARDRVRVLTSVFP
ATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPFGPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSW
LVDTPYSRAVTGRYARRHGYQGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL
DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTELDFQSYCRERLGTVCQVARSE
ELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVGEGRFAQVGVHGGASASEQWVPLIAARP

Specific function: Unknown

COG id: COG1524

COG function: function code R; Uncharacterized proteins of the AP superfamily

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43020; Mature: 43020

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLA
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCHHH
RQPGSSLARDRVRVLTSVFPATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPF
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEECCC
GPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSWLVDTPYSRAVTGRYARRHGY
CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHCCC
QGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL
CCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTEL
CCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC
DFQSYCRERLGTVCQVARSEELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVG
CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCCCEEEECEEEC
EGRFAQVGVHGGASASEQWVPLIAARP
CCCEEEEECCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MDRPSYEGSGLVNLMASLGRAFGAASSHYPALDPEPELGLEEARTVILWIMDGLGDHYLA
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHEEEEEEECCCCCCHHH
RQPGSSLARDRVRVLTSVFPATTSAALTSIITGRPPRGHGVTGWFMYVHELGAVTAWLPF
CCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHEEECCC
GPRVGKGQWSSIEPESAELLQRDPIWDRFQAETHVVQPSWLVDTPYSRAVTGRYARRHGY
CCCCCCCCCCCCCCHHHHHHHCCCCHHHHCCCCEEECCCEEECCCHHHHHHHHHHHHCCC
QGLDELREVLVRIAREPGRQRRFVYAYWPDLDTLSHQHGVDSAAVRDQFRSIDIAWQRLL
CCHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
DGLQGTDTVILGTADHGLIDTAPERTLYLGDHPELAEMLALPLCGEPRAAYCYLRPGTEL
CCCCCCCEEEEECCCCCCCCCCCCCEEEECCCHHHHHHHHCCCCCCCCCEEEEECCCCCC
DFQSYCRERLGTVCQVARSEELLAAGWFGPMPEHPKLRRRIGDWVLLPADGWVIKDRLVG
CHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHCCCEEEECCCCEEEECEEEC
EGRFAQVGVHGGASASEQWVPLIAARP
CCCEEEEECCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA