| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997857
Identifier: 121997857
GI number: 121997857
Start: 1157294
End: 1158955
Strand: Reverse
Name: 121997857
Synonym: Hhal_1066
Alternate gene names: NA
Gene position: 1158955-1157294 (Counterclockwise)
Preceding gene: 121997858
Following gene: 121997856
Centisome position: 43.27
GC content: 71.3
Gene sequence:
>1662_bases ATGGAACAGCTGCAGACGCTCCTCCAGCGCCTCGACGGTCGAGGCTACAAGGCGTACAAGGACATCCAGGGCCGCCACGC GTTCCCTGGTTTCACCCTGTGCGTCGACAAGGTCCAGGCTGACCCCTTCGCCGCTCCCTCGCGGATGCGGGCCGTCGTAC CGTGGCAACAGGTCGCCTTACCGGAGCCGGCCCTGGCCGGAGAGCCCCGGCGCCGCGCGGCGCGCGACTATATCGCGCGG GCCTTCGCGAACGAAGCAGACGGTGAGCAGGCGGTGCGCATCGATGCCGGCGCGCAGACGGTGCTCGATCGCAGCGCCGT GCTGTTCACCGATGCCGGGGTCGAGCTGCGCTTCACCGTTGCCTTGCCGGCCCGGGGGCGGACCATCCTCGGGCGCCAGG CCGCCGAGATCCTCTGCCGGAAGCTGCCGCGGATCGTCGCCGGGGCTACCGAGGCGCAGCGGCTGGATGCCGCCGCGCTG GAGCGCCACTGCGCGGCGGTGGAGGACCAGCACGCCCTGCGCGGACAGCTTGCCGAGCGTGGTCTGGTCGCCTTTGTCGC CGATGGGGCCGTGCTGCCGCGGCGCTCCGGCGTGGACGACCGGCCCTTGGCGGACGCCATCCCCTTCGACAGCCCCGATT CGTTGCGGGTGACGCTGGAGGCGCCGAACGCCGGCTCGATCTCCGGCATGGGGATCCCGCGCGGGATCACCCTGATTGTC GGGGGTGGCTTCCACGGCAAGTCGACCCTGCTCAACGCCCTGGAACTCGGTGTCTACGACCACAGGCCGGGGGACGGGCG TGACGGTGTGGTCAGCCTTGAGGACGCGGCCAAGATCCGCGCCGAGGATGGTCGGGCCGTGCACGCCGTGGATCTCTCCC CCTATATCGGCGAGCTCCCCTTCGGCAAGTCCACGACCGCTTTTTCTACCGATCTGGCCTCCGGCTCCACCAGCCAGGCG GCGGCCCTGCAGGAGGCGCTGGAGGCGGGCTCGCGGACCCTGCTGGTCGACGAGGACACCTCGGCCACCAACTTCATGAT CCGCGATCGGCGCATGCAGGCCCTGGTAGCCCGAGACGCCGAGCCGATCACCCCGCTGGTGGATCGCATCGCCGAGCTGC GTGACCGGTACGGGGTCTCGACCCTGCTGGTGATGGGGGGCTCCGGCGACTATCTGGATAGCGCCGATACGGTGATCCAG ATGCAGGACTACCGCCCGGCGGACGTCACCGCCGAGGCGCGCCGCGTGGCGACCGAGTACGCCACCGGGCGCCACGCCGA AATCCGTTCGCCGCTGTCCTGGCCGGCCATGCGGGCCGTGGACGGGCGGACGGTGCGCACCGAAACCAAGCCCGGTAAGC GCAAGGTTCAGGGCCGGGGCCGGGATACCCTCCTGGTGGGCCGCGAGGCCATCGACCTGCGCGCCGTGGAGCAGATCGCC GATGCGGCCCAGGTGCGGGCCATCGGCCTGCTGCTCGAGCGGCTCGCCGACAGCGGCCGGGTCGAGGATCCGCCGGCGTG GGTAGCCGAACTGCTGACGCGCCACTGGGCACAACTGCTGCCCCGTCCCGACGGCGATCTGGCCCGCCCGCGGACGATCG AGGTCATGGCTGCGCTCAACCGCCTGCGCGGTGTCCGTTTCAACGCCGACGGCGTAGGCTAG
Upstream 100 bases:
>100_bases TCGGCGCCCTGGCCATCGGCGAGGATCGCGGCGACGTGCGCGGCTGAGCCGGGCCCAGGCCCTTGGCCGGGGCGGTCGGC CTCGGCTACCGTGTGCCGCC
Downstream 100 bases:
>100_bases GTTGGAACAGGCCATCGGAGCGGAGGGCAGAGCATGCGGGTGCTGATCATCGGGGCCCACGGGCAGGTGGGACGGCGGCT GGTGGAGCGGCTCGCGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 553; Mature: 553
Protein sequence:
>553_residues MEQLQTLLQRLDGRGYKAYKDIQGRHAFPGFTLCVDKVQADPFAAPSRMRAVVPWQQVALPEPALAGEPRRRAARDYIAR AFANEADGEQAVRIDAGAQTVLDRSAVLFTDAGVELRFTVALPARGRTILGRQAAEILCRKLPRIVAGATEAQRLDAAAL ERHCAAVEDQHALRGQLAERGLVAFVADGAVLPRRSGVDDRPLADAIPFDSPDSLRVTLEAPNAGSISGMGIPRGITLIV GGGFHGKSTLLNALELGVYDHRPGDGRDGVVSLEDAAKIRAEDGRAVHAVDLSPYIGELPFGKSTTAFSTDLASGSTSQA AALQEALEAGSRTLLVDEDTSATNFMIRDRRMQALVARDAEPITPLVDRIAELRDRYGVSTLLVMGGSGDYLDSADTVIQ MQDYRPADVTAEARRVATEYATGRHAEIRSPLSWPAMRAVDGRTVRTETKPGKRKVQGRGRDTLLVGREAIDLRAVEQIA DAAQVRAIGLLLERLADSGRVEDPPAWVAELLTRHWAQLLPRPDGDLARPRTIEVMAALNRLRGVRFNADGVG
Sequences:
>Translated_553_residues MEQLQTLLQRLDGRGYKAYKDIQGRHAFPGFTLCVDKVQADPFAAPSRMRAVVPWQQVALPEPALAGEPRRRAARDYIAR AFANEADGEQAVRIDAGAQTVLDRSAVLFTDAGVELRFTVALPARGRTILGRQAAEILCRKLPRIVAGATEAQRLDAAAL ERHCAAVEDQHALRGQLAERGLVAFVADGAVLPRRSGVDDRPLADAIPFDSPDSLRVTLEAPNAGSISGMGIPRGITLIV GGGFHGKSTLLNALELGVYDHRPGDGRDGVVSLEDAAKIRAEDGRAVHAVDLSPYIGELPFGKSTTAFSTDLASGSTSQA AALQEALEAGSRTLLVDEDTSATNFMIRDRRMQALVARDAEPITPLVDRIAELRDRYGVSTLLVMGGSGDYLDSADTVIQ MQDYRPADVTAEARRVATEYATGRHAEIRSPLSWPAMRAVDGRTVRTETKPGKRKVQGRGRDTLLVGREAIDLRAVEQIA DAAQVRAIGLLLERLADSGRVEDPPAWVAELLTRHWAQLLPRPDGDLARPRTIEVMAALNRLRGVRFNADGVG >Mature_553_residues MEQLQTLLQRLDGRGYKAYKDIQGRHAFPGFTLCVDKVQADPFAAPSRMRAVVPWQQVALPEPALAGEPRRRAARDYIAR AFANEADGEQAVRIDAGAQTVLDRSAVLFTDAGVELRFTVALPARGRTILGRQAAEILCRKLPRIVAGATEAQRLDAAAL ERHCAAVEDQHALRGQLAERGLVAFVADGAVLPRRSGVDDRPLADAIPFDSPDSLRVTLEAPNAGSISGMGIPRGITLIV GGGFHGKSTLLNALELGVYDHRPGDGRDGVVSLEDAAKIRAEDGRAVHAVDLSPYIGELPFGKSTTAFSTDLASGSTSQA AALQEALEAGSRTLLVDEDTSATNFMIRDRRMQALVARDAEPITPLVDRIAELRDRYGVSTLLVMGGSGDYLDSADTVIQ MQDYRPADVTAEARRVATEYATGRHAEIRSPLSWPAMRAVDGRTVRTETKPGKRKVQGRGRDTLLVGREAIDLRAVEQIA DAAQVRAIGLLLERLADSGRVEDPPAWVAELLTRHWAQLLPRPDGDLARPRTIEVMAALNRLRGVRFNADGVG
Specific function: Unknown
COG id: COG3044
COG function: function code R; Predicted ATPase of the ABC class
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR019195 [H]
Pfam domain/function: PF09818 ABC_ATPase [H]
EC number: NA
Molecular weight: Translated: 59689; Mature: 59689
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEQLQTLLQRLDGRGYKAYKDIQGRHAFPGFTLCVDKVQADPFAAPSRMRAVVPWQQVAL CHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHEEHHHHCCCCCCCHHHCEEECCHHHHCC PEPALAGEPRRRAARDYIARAFANEADGEQAVRIDAGAQTVLDRSAVLFTDAGVELRFTV CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCEEEEEECCCEEEEEE ALPARGRTILGRQAAEILCRKLPRIVAGATEAQRLDAAALERHCAAVEDQHALRGQLAER EECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLVAFVADGAVLPRRSGVDDRPLADAIPFDSPDSLRVTLEAPNAGSISGMGIPRGITLIV CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE GGGFHGKSTLLNALELGVYDHRPGDGRDGVVSLEDAAKIRAEDGRAVHAVDLSPYIGELP ECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCCCEEEEEECCCCCCCCC FGKSTTAFSTDLASGSTSQAAALQEALEAGSRTLLVDEDTSATNFMIRDRRMQALVARDA CCCCCCCEEHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHCCC EPITPLVDRIAELRDRYGVSTLLVMGGSGDYLDSADTVIQMQDYRPADVTAEARRVATEY CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH ATGRHAEIRSPLSWPAMRAVDGRTVRTETKPGKRKVQGRGRDTLLVGREAIDLRAVEQIA CCCCCHHHCCCCCCCHHHHCCCCEEEECCCCCHHHHCCCCCCEEEECCHHHHHHHHHHHH DAAQVRAIGLLLERLADSGRVEDPPAWVAELLTRHWAQLLPRPDGDLARPRTIEVMAALN HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH RLRGVRFNADGVG HHCCCEECCCCCC >Mature Secondary Structure MEQLQTLLQRLDGRGYKAYKDIQGRHAFPGFTLCVDKVQADPFAAPSRMRAVVPWQQVAL CHHHHHHHHHHCCCCCCHHHHCCCCCCCCCHHEEHHHHCCCCCCCHHHCEEECCHHHHCC PEPALAGEPRRRAARDYIARAFANEADGEQAVRIDAGAQTVLDRSAVLFTDAGVELRFTV CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHCCCEEEEEECCCEEEEEE ALPARGRTILGRQAAEILCRKLPRIVAGATEAQRLDAAALERHCAAVEDQHALRGQLAER EECCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC GLVAFVADGAVLPRRSGVDDRPLADAIPFDSPDSLRVTLEAPNAGSISGMGIPRGITLIV CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEE GGGFHGKSTLLNALELGVYDHRPGDGRDGVVSLEDAAKIRAEDGRAVHAVDLSPYIGELP ECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEECHHHHHCCCCCCEEEEEECCCCCCCCC FGKSTTAFSTDLASGSTSQAAALQEALEAGSRTLLVDEDTSATNFMIRDRRMQALVARDA CCCCCCCEEHHCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHHHHHHHHHCCC EPITPLVDRIAELRDRYGVSTLLVMGGSGDYLDSADTVIQMQDYRPADVTAEARRVATEY CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHH ATGRHAEIRSPLSWPAMRAVDGRTVRTETKPGKRKVQGRGRDTLLVGREAIDLRAVEQIA CCCCCHHHCCCCCCCHHHHCCCCEEEECCCCCHHHHCCCCCCEEEECCHHHHHHHHHHHH DAAQVRAIGLLLERLADSGRVEDPPAWVAELLTRHWAQLLPRPDGDLARPRTIEVMAALN HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH RLRGVRFNADGVG HHCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]