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The map label for this gene is yncD [H]

Identifier: 121997852

GI number: 121997852

Start: 1149272

End: 1151347

Strand: Reverse

Name: yncD [H]

Synonym: Hhal_1061

Alternate gene names: 121997852

Gene position: 1151347-1149272 (Counterclockwise)

Preceding gene: 121997856

Following gene: 121997851

Centisome position: 42.99

GC content: 71.1

Gene sequence:

>2076_bases
GTGGGGTTATCGCTGGCCCTCGGTCCCACCGGTCCGGCGCTCGGCGCGGAGGCGGCGCTGCCGCCGGTGGTCGCCACCGT
GCCGCGGCTCGACGTGGACCCCGACGACTACCCGGCGGCCGTCTCCGTCGTCGGCCGCGAGGCCTACGCCAGCGGCCGGC
GCCTCTCCCTGGATCAGGGCCTCGATCGGGTCCCCGGCGTGCATACGCAGAACCGCTACAACGCCGCCCAGGACCTGCGC
CTGTCGGTGCGCGGGTTCGGGGCCCGCTCACCCTTTGGGGTGCGCGGCATACGGGCCTTGGTCGACGACGTGCCGTACAC
CGTGGCCGACGGCCAGAGCCAGCTCGACGCCCTGGACCCGGCCTTTGTGGAGCAGCTGGAGGTCATCCGCGGGCCGGCCT
CCGCCCTCTACGGCAACGCCGCCGGCGGTGTCTTCCGCTTCACCACCCTGGAACCCCCGGAGAGCGGCGAGTTCCTCGGC
GGCGAGGTGCTCTTCGGCAGCCACGGCGAGCGGGCCCAGCGGGTCTGGGGCGGTCGTGCCGAGGAGGCCTGGCGCACGGC
GGTGACCGCCTCCAACCAGGAGATGGACGGCTACCGCGACCATTCGGGCGCGGCGCAGCGCCGACTGAATATCAAGCTCG
ACCGCGATCTGGCCGGCGGCGAGCGGCTGCGCTTTATCGCCAACCTCCTCGATGCGCCGGAGGCTCAAGACCCCGGCGGG
CTGAGCCGCGAACAGGTGCGGGACGATCGTCGGCAAGCGACGGACAACGCCGTGGACCGTGACGCCGGCGAAGAGGTGGA
GCAGCAGACCGGTGCCGTGATCCTCACCGCCGAGCCGTCGGCCACCGAGTTTTGGGAGGGGCGGGCCTTCCTGCAGCGCC
GGGACTTCTACCGGCGGAACCCGTTCCCGGGTGGTAATGGTGACCCAGGCGGCATTGTCACCTTTGAGCGCTACTACGGC
GGCGTCGGCGGCCGTCACGTGCGGCGTACCGAGGCCGCCGGGCGCCCGGTGCAGGTGTCGGTGGGCACGGACGCCGAGTG
GCAGTACGACGACCGGCAACGGTACGTGAACAACAACGGTCGTGAGGGTGAGCGGACCAACGATCAGCGGGAGCGGGCCC
AGGTGGTGGCCGGCTACCTGCAGGCGGACTGGGAGGTGGCGCCGCGCTGGCGGCTGGTCGGTGGCGGGCGTCTGGACTGG
ACTCGGCTGAGCATCGATGATCGCGAGGCGGGGTTGGATACCGACAGTCAGACCTACACCGAGCCCAGCTACCTCGCCGG
GGTGCGCTACGCCGTGGCCGAGGACCACAGCCTCTACGCCAAGGCCAGCTCCGCCTTCGAGACGCCGACGCTCTGGGAGC
TGTGGGACCGGGACGCCGGGGGCATCGACGACACCATCGAGCCGCAGCAGGCGCGCTCCGTGGAGGTCGGCGTCAAGGGG
CGGGCCCTGGATCGGCGGCTGCGCTACGAGCTGACCCTCTTCCAGGTGCGGACGGAGGATGAGCTGGTTCCGCAGGAGGA
TGCAGACGGCCCGACCCGGTATGCGAACGCCGGCGAGACTCGCCGGCGTGGCGTGGAGTTGGGGGTGGAGGCCTTCCCCA
CGGAGCGCCTGGAGGTGACGGCCGCCCTGGCCTACGGGCAATTTACCTTCCGGGATTTCGAGACGTCCGAGTTGGAGGGC
GTATCCGGCGCCGAGGACCCCGATCAGGTTCGTGGCAACCGCATCCCCGGTGTGCCGCGGGCCCACGGCTACCTGGAGAC
GGCCTGGCAGGCCCCCAGCGGCTGGCGCTGGGCCGCCGATGTGCGCGCCAGCGAGGGCATCTGGGCCGACGACCGCAACA
CCCAGCGCAGCTCCGGCTATACGGAGGTCGGCCTCCACGCCAGCCGGACCTTCGTCACCGACGCCTACGAGGCCGAGCCC
TTCTTCGGGGTGAACAACCTCTTCGACGCCACCTACGACGCCAACGTGCGCATCAACGCGGCCAACGAATCGGATAACAG
TCTGGAAGACGGTGGCTACTTCGAGCCGGCCCCGGAGCGGACCATCTACGCCGGTATCCGCTTCGCGACCTACTGA

Upstream 100 bases:

>100_bases
GATTGGGGTGAGCCGGCGAATCATCGGTGGTCCTGGTGCGCGGCGCAGATCAGGGTCGAATGTAGCACGCGGGCCTGGCG
CCTTTCTCGGGGGACTGTGG

Downstream 100 bases:

>100_bases
AACCGCCGGCGGGAGGCGTTACCCTCGCCGGCGTTGCCGGCCTTCCGGCCCTACCTGCGCCCGCGCCGGGCCGTCCAGTA
AGGAGACGTACACCCATGCC

Product: TonB-dependent receptor, plug

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 691; Mature: 690

Protein sequence:

>691_residues
MGLSLALGPTGPALGAEAALPPVVATVPRLDVDPDDYPAAVSVVGREAYASGRRLSLDQGLDRVPGVHTQNRYNAAQDLR
LSVRGFGARSPFGVRGIRALVDDVPYTVADGQSQLDALDPAFVEQLEVIRGPASALYGNAAGGVFRFTTLEPPESGEFLG
GEVLFGSHGERAQRVWGGRAEEAWRTAVTASNQEMDGYRDHSGAAQRRLNIKLDRDLAGGERLRFIANLLDAPEAQDPGG
LSREQVRDDRRQATDNAVDRDAGEEVEQQTGAVILTAEPSATEFWEGRAFLQRRDFYRRNPFPGGNGDPGGIVTFERYYG
GVGGRHVRRTEAAGRPVQVSVGTDAEWQYDDRQRYVNNNGREGERTNDQRERAQVVAGYLQADWEVAPRWRLVGGGRLDW
TRLSIDDREAGLDTDSQTYTEPSYLAGVRYAVAEDHSLYAKASSAFETPTLWELWDRDAGGIDDTIEPQQARSVEVGVKG
RALDRRLRYELTLFQVRTEDELVPQEDADGPTRYANAGETRRRGVELGVEAFPTERLEVTAALAYGQFTFRDFETSELEG
VSGAEDPDQVRGNRIPGVPRAHGYLETAWQAPSGWRWAADVRASEGIWADDRNTQRSSGYTEVGLHASRTFVTDAYEAEP
FFGVNNLFDATYDANVRINAANESDNSLEDGGYFEPAPERTIYAGIRFATY

Sequences:

>Translated_691_residues
MGLSLALGPTGPALGAEAALPPVVATVPRLDVDPDDYPAAVSVVGREAYASGRRLSLDQGLDRVPGVHTQNRYNAAQDLR
LSVRGFGARSPFGVRGIRALVDDVPYTVADGQSQLDALDPAFVEQLEVIRGPASALYGNAAGGVFRFTTLEPPESGEFLG
GEVLFGSHGERAQRVWGGRAEEAWRTAVTASNQEMDGYRDHSGAAQRRLNIKLDRDLAGGERLRFIANLLDAPEAQDPGG
LSREQVRDDRRQATDNAVDRDAGEEVEQQTGAVILTAEPSATEFWEGRAFLQRRDFYRRNPFPGGNGDPGGIVTFERYYG
GVGGRHVRRTEAAGRPVQVSVGTDAEWQYDDRQRYVNNNGREGERTNDQRERAQVVAGYLQADWEVAPRWRLVGGGRLDW
TRLSIDDREAGLDTDSQTYTEPSYLAGVRYAVAEDHSLYAKASSAFETPTLWELWDRDAGGIDDTIEPQQARSVEVGVKG
RALDRRLRYELTLFQVRTEDELVPQEDADGPTRYANAGETRRRGVELGVEAFPTERLEVTAALAYGQFTFRDFETSELEG
VSGAEDPDQVRGNRIPGVPRAHGYLETAWQAPSGWRWAADVRASEGIWADDRNTQRSSGYTEVGLHASRTFVTDAYEAEP
FFGVNNLFDATYDANVRINAANESDNSLEDGGYFEPAPERTIYAGIRFATY
>Mature_690_residues
GLSLALGPTGPALGAEAALPPVVATVPRLDVDPDDYPAAVSVVGREAYASGRRLSLDQGLDRVPGVHTQNRYNAAQDLRL
SVRGFGARSPFGVRGIRALVDDVPYTVADGQSQLDALDPAFVEQLEVIRGPASALYGNAAGGVFRFTTLEPPESGEFLGG
EVLFGSHGERAQRVWGGRAEEAWRTAVTASNQEMDGYRDHSGAAQRRLNIKLDRDLAGGERLRFIANLLDAPEAQDPGGL
SREQVRDDRRQATDNAVDRDAGEEVEQQTGAVILTAEPSATEFWEGRAFLQRRDFYRRNPFPGGNGDPGGIVTFERYYGG
VGGRHVRRTEAAGRPVQVSVGTDAEWQYDDRQRYVNNNGREGERTNDQRERAQVVAGYLQADWEVAPRWRLVGGGRLDWT
RLSIDDREAGLDTDSQTYTEPSYLAGVRYAVAEDHSLYAKASSAFETPTLWELWDRDAGGIDDTIEPQQARSVEVGVKGR
ALDRRLRYELTLFQVRTEDELVPQEDADGPTRYANAGETRRRGVELGVEAFPTERLEVTAALAYGQFTFRDFETSELEGV
SGAEDPDQVRGNRIPGVPRAHGYLETAWQAPSGWRWAADVRASEGIWADDRNTQRSSGYTEVGLHASRTFVTDAYEAEPF
FGVNNLFDATYDANVRINAANESDNSLEDGGYFEPAPERTIYAGIRFATY

Specific function: Probable receptor, tonB-dependent [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

Organism=Escherichia coli, GI1787723, Length=711, Percent_Identity=32.3488045007032, Blast_Score=297, Evalue=1e-81,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 76087; Mature: 75956

Theoretical pI: Translated: 4.49; Mature: 4.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.1 %Met     (Mature Protein)
0.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLSLALGPTGPALGAEAALPPVVATVPRLDVDPDDYPAAVSVVGREAYASGRRLSLDQG
CCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHC
LDRVPGVHTQNRYNAAQDLRLSVRGFGARSPFGVRGIRALVDDVPYTVADGQSQLDALDP
HHHCCCCCCCCCCCHHHHCEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHCCH
AFVEQLEVIRGPASALYGNAAGGVFRFTTLEPPESGEFLGGEVLFGSHGERAQRVWGGRA
HHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCH
EEAWRTAVTASNQEMDGYRDHSGAAQRRLNIKLDRDLAGGERLRFIANLLDAPEAQDPGG
HHHHHHHHCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
LSREQVRDDRRQATDNAVDRDAGEEVEQQTGAVILTAEPSATEFWEGRAFLQRRDFYRRN
CCHHHHHHHHHHHHCCHHCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
PFPGGNGDPGGIVTFERYYGGVGGRHVRRTEAAGRPVQVSVGTDAEWQYDDRQRYVNNNG
CCCCCCCCCCCEEEEHHHHCCCCCCEEEHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCC
REGERTNDQRERAQVVAGYLQADWEVAPRWRLVGGGRLDWTRLSIDDREAGLDTDSQTYT
CCCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCEEEEEEEECCCHHCCCCCCCCCCC
EPSYLAGVRYAVAEDHSLYAKASSAFETPTLWELWDRDAGGIDDTIEPQQARSVEVGVKG
CCHHHHHEEEEEECCCHHEECCCCCCCCCCHHHHHCCCCCCCCCCCCCHHCCEEEECCCC
RALDRRLRYELTLFQVRTEDELVPQEDADGPTRYANAGETRRRGVELGVEAFPTERLEVT
HHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCHHCCHHHCCCCCEEEE
AALAYGQFTFRDFETSELEGVSGAEDPDQVRGNRIPGVPRAHGYLETAWQAPSGWRWAAD
EEEEECCEEEECCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEC
VRASEGIWADDRNTQRSSGYTEVGLHASRTFVTDAYEAEPFFGVNNLFDATYDANVRINA
CCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCHHHHCCEECCCEEEEE
ANESDNSLEDGGYFEPAPERTIYAGIRFATY
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECC
>Mature Secondary Structure 
GLSLALGPTGPALGAEAALPPVVATVPRLDVDPDDYPAAVSVVGREAYASGRRLSLDQG
CCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHC
LDRVPGVHTQNRYNAAQDLRLSVRGFGARSPFGVRGIRALVDDVPYTVADGQSQLDALDP
HHHCCCCCCCCCCCHHHHCEEEEECCCCCCCCCHHHHHHHHHCCCEEECCCCHHHHHCCH
AFVEQLEVIRGPASALYGNAAGGVFRFTTLEPPESGEFLGGEVLFGSHGERAQRVWGGRA
HHHHHHHHHHCCHHHHCCCCCCCEEEEEECCCCCCCCCCCCEEEECCCCHHHHHHHCCCH
EEAWRTAVTASNQEMDGYRDHSGAAQRRLNIKLDRDLAGGERLRFIANLLDAPEAQDPGG
HHHHHHHHCCCCCCCCCCCCCCCHHHEEEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCC
LSREQVRDDRRQATDNAVDRDAGEEVEQQTGAVILTAEPSATEFWEGRAFLQRRDFYRRN
CCHHHHHHHHHHHHCCHHCCCHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHCC
PFPGGNGDPGGIVTFERYYGGVGGRHVRRTEAAGRPVQVSVGTDAEWQYDDRQRYVNNNG
CCCCCCCCCCCEEEEHHHHCCCCCCEEEHHHCCCCCEEEEECCCCCCCCCHHHHHHCCCC
REGERTNDQRERAQVVAGYLQADWEVAPRWRLVGGGRLDWTRLSIDDREAGLDTDSQTYT
CCCCCCCHHHHHHHHHHHHHHCCCEECCCEEEEECCEEEEEEEECCCHHCCCCCCCCCCC
EPSYLAGVRYAVAEDHSLYAKASSAFETPTLWELWDRDAGGIDDTIEPQQARSVEVGVKG
CCHHHHHEEEEEECCCHHEECCCCCCCCCCHHHHHCCCCCCCCCCCCCHHCCEEEECCCC
RALDRRLRYELTLFQVRTEDELVPQEDADGPTRYANAGETRRRGVELGVEAFPTERLEVT
HHHHHHHEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCHHCCHHHCCCCCEEEE
AALAYGQFTFRDFETSELEGVSGAEDPDQVRGNRIPGVPRAHGYLETAWQAPSGWRWAAD
EEEEECCEEEECCCHHHCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHCCCCCCCEEEEC
VRASEGIWADDRNTQRSSGYTEVGLHASRTFVTDAYEAEPFFGVNNLFDATYDANVRINA
CCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEECCCCCCCCCCCHHHHCCEECCCEEEEE
ANESDNSLEDGGYFEPAPERTIYAGIRFATY
CCCCCCCCCCCCCCCCCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]