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The map label for this gene is rbcL

Identifier: 121997837

GI number: 121997837

Start: 1131472

End: 1132893

Strand: Reverse

Name: rbcL

Synonym: Hhal_1046

Alternate gene names: 121997837

Gene position: 1132893-1131472 (Counterclockwise)

Preceding gene: 121997841

Following gene: 121997836

Centisome position: 42.3

GC content: 65.89

Gene sequence:

>1422_bases
ATGGCTAGCAAGACGTACACCGCGGGCGTCAAGGACTATCGGGAGACCTACTGGGAGCCCGATTACAAGATCAAGGATAG
CGACCTGTTGGCCGTGTTCAAGGTGACGCCGCAGCCCGGCGTAGACCGCGAGGAGGCTGCCGCTGCGGTCGCGGCCGAGT
CCTCTACCGGCACCTGGACCACGGTCTGGACCGACCTGCTCACCGACCTGGAGCACTATAAGGGCCGCGCCTACAAGGTC
GAGGACGTGCCGGGCGACGACGAGGCCTTCTACGCCTTCATCGCTTACCCCATCGACCTCTTCGAAGAGGGTTCGATTGT
TAACGTGTTCACCTCTCTGGTGGGCAACGTCTTCGGTTTCAAGGCCGTGCGCGCCCTGCGCCTGGAAGATGTGCGCTTCC
CGCTGCACTTTGTGATGACCTGCCCCGGGCCGCCGAACGGCATCCAGGTCGAGCGGGACAAGATGAACAAGTACGGCCGC
CCGCTGCTCGGCTGCACCATCAAGCCGAAGCTCGGCCTCTCCGCCAAGAACTACGGCCGTGCCGTCTACGAGTGCCTGCG
CGGCGGTCTCGACTTCACCAAGGACGACGAGAACGTTAACTCCCAGCCGTTCATGCGCTGGCGGGATCGCTTCGAGTTCG
TCATGGAGGCGATCCAGAAGGCCGAGGAGGAGACCGGCGAGCGCAAGGGCCACTACCTCAACGTCACCGCCCCGACGCCG
GAGGAGATGTACAAGCGTGCCGAGTTCGCCAAGGAGCTGGGCGCACCGATCATCATGCACGACTACATTACCGCCGGCTT
CTGCGCCCACCAGGGCCTGGCCAACTGGTGCCGGGACAACGGCATGCTGCTGCACATCCACCGCGCCATGCACGCCGTGC
TCGACCGCAACCCGAACCACGGCATCCACTTCCGGGTCCTGACCAAGATCCTGCGCCTGATGGGCGGCGACCAGCTGCAC
ACCGGCACGGTGGTCGGCAAGCTCGAGGGCGACCGCCAGTCGACGCTGGGCTGGATCGATCTGCTGCGCAAGCCCTACAT
CGAGGAGGACCGCTCCCGCGGCCTGTTCTTCGACCAGGACTGGGGTGCGATGCCCGGGGCCTTCGCCGTCGCCTCCGGCG
GCATCCACGTCTGGCACATGCCGGCGCTGCTGTCGATCTTCGGCGACGACGCGGTCTTCCAGTTCGGTGGCGGCACGCTG
GGCCACCCGTGGGGCAATGCCGCCGGCGCTGCGGCCAACCGCGTGGCCCTGGAGGCCTGCGTCAAGGCGCGCAACGAGGG
GCGTGAGCTCGAGAAGGAGGGCAAGGAGATCCTCACCGAGGCCGCCAAGTCGAGCCCCGAGCTCAAGGCCGCCATGGAGA
CCTGGAAGGAGATCAAGTTCGAGTTCGACACCGTGGACAAGCTGGACACGGCGCACCGGTAA

Upstream 100 bases:

>100_bases
CGAGACATGCCGCAAGGGGCATCGAGAAGGACCGGCGCTGCAGGGAAGGCCCCGGGGGCGTGTTTGGACTTAAAAGCAGA
AACGCTTGAGGAGAGGATCG

Downstream 100 bases:

>100_bases
AGGGGAAGGAGACTGAGCAATGAGTGAGATCCAGGATTACAACTCCAAGCTGTCCGATCCGAACAGCCGTCGCTTCGAGA
CCTTCTCCTACCTGCCGGAG

Product: ribulose bisophosphate carboxylase

Products: NA

Alternate protein names: RuBisCO large subunit

Number of amino acids: Translated: 473; Mature: 472

Protein sequence:

>473_residues
MASKTYTAGVKDYRETYWEPDYKIKDSDLLAVFKVTPQPGVDREEAAAAVAAESSTGTWTTVWTDLLTDLEHYKGRAYKV
EDVPGDDEAFYAFIAYPIDLFEEGSIVNVFTSLVGNVFGFKAVRALRLEDVRFPLHFVMTCPGPPNGIQVERDKMNKYGR
PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFEFVMEAIQKAEEETGERKGHYLNVTAPTP
EEMYKRAEFAKELGAPIIMHDYITAGFCAHQGLANWCRDNGMLLHIHRAMHAVLDRNPNHGIHFRVLTKILRLMGGDQLH
TGTVVGKLEGDRQSTLGWIDLLRKPYIEEDRSRGLFFDQDWGAMPGAFAVASGGIHVWHMPALLSIFGDDAVFQFGGGTL
GHPWGNAAGAAANRVALEACVKARNEGRELEKEGKEILTEAAKSSPELKAAMETWKEIKFEFDTVDKLDTAHR

Sequences:

>Translated_473_residues
MASKTYTAGVKDYRETYWEPDYKIKDSDLLAVFKVTPQPGVDREEAAAAVAAESSTGTWTTVWTDLLTDLEHYKGRAYKV
EDVPGDDEAFYAFIAYPIDLFEEGSIVNVFTSLVGNVFGFKAVRALRLEDVRFPLHFVMTCPGPPNGIQVERDKMNKYGR
PLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFEFVMEAIQKAEEETGERKGHYLNVTAPTP
EEMYKRAEFAKELGAPIIMHDYITAGFCAHQGLANWCRDNGMLLHIHRAMHAVLDRNPNHGIHFRVLTKILRLMGGDQLH
TGTVVGKLEGDRQSTLGWIDLLRKPYIEEDRSRGLFFDQDWGAMPGAFAVASGGIHVWHMPALLSIFGDDAVFQFGGGTL
GHPWGNAAGAAANRVALEACVKARNEGRELEKEGKEILTEAAKSSPELKAAMETWKEIKFEFDTVDKLDTAHR
>Mature_472_residues
ASKTYTAGVKDYRETYWEPDYKIKDSDLLAVFKVTPQPGVDREEAAAAVAAESSTGTWTTVWTDLLTDLEHYKGRAYKVE
DVPGDDEAFYAFIAYPIDLFEEGSIVNVFTSLVGNVFGFKAVRALRLEDVRFPLHFVMTCPGPPNGIQVERDKMNKYGRP
LLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFEFVMEAIQKAEEETGERKGHYLNVTAPTPE
EMYKRAEFAKELGAPIIMHDYITAGFCAHQGLANWCRDNGMLLHIHRAMHAVLDRNPNHGIHFRVLTKILRLMGGDQLHT
GTVVGKLEGDRQSTLGWIDLLRKPYIEEDRSRGLFFDQDWGAMPGAFAVASGGIHVWHMPALLSIFGDDAVFQFGGGTLG
HPWGNAAGAAANRVALEACVKARNEGRELEKEGKEILTEAAKSSPELKAAMETWKEIKFEFDTVDKLDTAHR

Specific function: RuBisCO catalyzes two reactions:the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the

COG id: COG1850

COG function: function code G; Ribulose 1,5-bisphosphate carboxylase, large subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RuBisCO large chain family. Type I subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBL_HALHL (A1WVW0)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002624.1
- ProteinModelPortal:   A1WVW0
- SMR:   A1WVW0
- STRING:   A1WVW0
- GeneID:   4709802
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_1046
- eggNOG:   COG1850
- HOGENOM:   HBG405441
- OMA:   YTPDYTP
- ProtClustDB:   PRK04208
- BioCyc:   HHAL349124:HHAL_1046-MONOMER
- GO:   GO:0009536
- HAMAP:   MF_01338
- InterPro:   IPR020878
- InterPro:   IPR020888
- InterPro:   IPR000685
- InterPro:   IPR017443
- InterPro:   IPR017444
- Gene3D:   G3DSA:3.20.20.110
- Gene3D:   G3DSA:3.30.70.150

Pfam domain/function: PF00016 RuBisCO_large; PF02788 RuBisCO_large_N; SSF51649 RuBisCO_large; SSF54966 RuBisCO_large

EC number: =4.1.1.39

Molecular weight: Translated: 52991; Mature: 52859

Theoretical pI: Translated: 6.01; Mature: 6.01

Prosite motif: PS00157 RUBISCO_LARGE

Important sites: ACT_SITE 168-168 ACT_SITE 287-287 BINDING 116-116 BINDING 166-166 BINDING 170-170 BINDING 288-288 BINDING 320-320 BINDING 372-372

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKTYTAGVKDYRETYWEPDYKIKDSDLLAVFKVTPQPGVDREEAAAAVAAESSTGTWT
CCCCCCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCHHHHHHHHEECCCCCCHH
TVWTDLLTDLEHYKGRAYKVEDVPGDDEAFYAFIAYPIDLFEEGSIVNVFTSLVGNVFGF
HHHHHHHHHHHHHCCCEEEECCCCCCCHHEEEEEECCHHHHCCCCHHHHHHHHHHHHHHH
KAVRALRLEDVRFPLHFVMTCPGPPNGIQVERDKMNKYGRPLLGCTIKPKLGLSAKNYGR
HHHHHHHHHCCCCCEEEEEECCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH
AVYECLRGGLDFTKDDENVNSQPFMRWRDRFEFVMEAIQKAEEETGERKGHYLNVTAPTP
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH
EEMYKRAEFAKELGAPIIMHDYITAGFCAHQGLANWCRDNGMLLHIHRAMHAVLDRNPNH
HHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCC
GIHFRVLTKILRLMGGDQLHTGTVVGKLEGDRQSTLGWIDLLRKPYIEEDRSRGLFFDQD
CCHHHHHHHHHHHHCCCCEECCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEECC
WGAMPGAFAVASGGIHVWHMPALLSIFGDDAVFQFGGGTLGHPWGNAAGAAANRVALEAC
CCCCCCCCEEECCCEEEEEHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
VKARNEGRELEKEGKEILTEAAKSSPELKAAMETWKEIKFEFDTVDKLDTAHR
HHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCHHHHHCCCC
>Mature Secondary Structure 
ASKTYTAGVKDYRETYWEPDYKIKDSDLLAVFKVTPQPGVDREEAAAAVAAESSTGTWT
CCCCCCCCHHHHHHHHCCCCCEECCCCEEEEEEECCCCCCCHHHHHHHHEECCCCCCHH
TVWTDLLTDLEHYKGRAYKVEDVPGDDEAFYAFIAYPIDLFEEGSIVNVFTSLVGNVFGF
HHHHHHHHHHHHHCCCEEEECCCCCCCHHEEEEEECCHHHHCCCCHHHHHHHHHHHHHHH
KAVRALRLEDVRFPLHFVMTCPGPPNGIQVERDKMNKYGRPLLGCTIKPKLGLSAKNYGR
HHHHHHHHHCCCCCEEEEEECCCCCCCCEEEHHHHHHCCCCEEEEEECCCCCCCHHHHHH
AVYECLRGGLDFTKDDENVNSQPFMRWRDRFEFVMEAIQKAEEETGERKGHYLNVTAPTP
HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCH
EEMYKRAEFAKELGAPIIMHDYITAGFCAHQGLANWCRDNGMLLHIHRAMHAVLDRNPNH
HHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHCCCCCC
GIHFRVLTKILRLMGGDQLHTGTVVGKLEGDRQSTLGWIDLLRKPYIEEDRSRGLFFDQD
CCHHHHHHHHHHHHCCCCEECCEEEEEECCCHHHHHHHHHHHHCCCCCCCCCCCCEEECC
WGAMPGAFAVASGGIHVWHMPALLSIFGDDAVFQFGGGTLGHPWGNAAGAAANRVALEAC
CCCCCCCCEEECCCEEEEEHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHH
VKARNEGRELEKEGKEILTEAAKSSPELKAAMETWKEIKFEFDTVDKLDTAHR
HHHHHCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA