| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997721
Identifier: 121997721
GI number: 121997721
Start: 1007210
End: 1008226
Strand: Reverse
Name: 121997721
Synonym: Hhal_0930
Alternate gene names: NA
Gene position: 1008226-1007210 (Counterclockwise)
Preceding gene: 121997722
Following gene: 121997720
Centisome position: 37.64
GC content: 77.58
Gene sequence:
>1017_bases ATGTTGCCTGTCTCGGTCCAGGGGCCGCTGGATGCGCGGGCCTGGGTGGACCTCGATGCCGCTGGGTGCCCGGGGATCGC GGTGGCGGTCAAGGCCGGCTTCCGCGGCGGCGATGCCGCCCGGCTGCGCCTCGATGACGACACGCCGGCGCTGGAGACCG CCGAACGCTACGCCGGTGATCCCGCCGCTCACGCCCCGCTCACCGCACCCGACTGCGTTCCCTTCAAGCACGGGGCCGAG TGCCTGCTCCACGGCGCGGTACAGGTCGGCCCCGGGCGGTCGCAGGCAGCGGCCTGTCTGGGGGTCGAGGACGCCGGCGG CCGGCCCCGGTTCGGCCCCAAGCGGGTGTGGGCGGTGGCCGAGCCGCCGCCGCGGGCCTCCGATCCGCCCGGTGCGCTGG AGGGGCCGGTGCCGCTCACCTACGAACTGGCCTACGGCGGACCACTCGGTGGGCCGCGGCACCGGCGTTACGCTCGCAAC CCGGTGGGCCGGGGGCATCGGGCGGCGTGGTGGGGTGCCGCCGCCGGGCCGTCGCCCCGGCTGCTGTGGGACGACCACCG CGCCACCCGGCGCGGGGCGCCCGCCGGCTTCGGGCCTCTGGCGGCGGCCTGGGCGCCCCGGGCCCGGCGTTTCGGGCGCC TGGATGCCCATGCCTATCGCCAGGGCCAGCTGCGCTACCGCCGCCTGCCCCGGCCCGACGCCTGGAATGCCGCCCCGGCA GACCAGTGCCTCGACACCCCGTTGTGCGGCGACGAGCGCATCCGCCTGCAGGGGGTCCTCCCTGGGGTGGACCCGGACCA CACGGTCATCTGGCAACTGCCCGGCGGCGGTCCGCAGGTCACCCTGCACCGCCCGGGGCGCGGACAGCGGGTGACGGTGC AGGCGGACACCCTGGGGATCGACGCCGACGCCGGCCGGGTGTGGCTGGTCTGGCGGGGGTGGGTGCCGGAGCCGGCGCCG GGGCCGGGCTGGGCATTGCGGGTCGATGCCGACGGGATCGGGGGCGGAGAGCGATGA
Upstream 100 bases:
>100_bases ACGGCGCCATCCGCATCGACGGCGAGGTGGTCGAGGCCAGGGCCCGCGGCGAGCACCGCATCCGCGGGGCCCGCGTCGCC ATCAACTGAGGTGCCCTGGA
Downstream 100 bases:
>100_bases ACCACGCCACCACCGCCCCCGTGCTGTTCGAGCCGCTGGCCGCCTGGCACGCCGCCGGCACCGATCCCGAGGCCCTGGCC CGTGCGGTGACCGACGCCCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 338; Mature: 338
Protein sequence:
>338_residues MLPVSVQGPLDARAWVDLDAAGCPGIAVAVKAGFRGGDAARLRLDDDTPALETAERYAGDPAAHAPLTAPDCVPFKHGAE CLLHGAVQVGPGRSQAAACLGVEDAGGRPRFGPKRVWAVAEPPPRASDPPGALEGPVPLTYELAYGGPLGGPRHRRYARN PVGRGHRAAWWGAAAGPSPRLLWDDHRATRRGAPAGFGPLAAAWAPRARRFGRLDAHAYRQGQLRYRRLPRPDAWNAAPA DQCLDTPLCGDERIRLQGVLPGVDPDHTVIWQLPGGGPQVTLHRPGRGQRVTVQADTLGIDADAGRVWLVWRGWVPEPAP GPGWALRVDADGIGGGER
Sequences:
>Translated_338_residues MLPVSVQGPLDARAWVDLDAAGCPGIAVAVKAGFRGGDAARLRLDDDTPALETAERYAGDPAAHAPLTAPDCVPFKHGAE CLLHGAVQVGPGRSQAAACLGVEDAGGRPRFGPKRVWAVAEPPPRASDPPGALEGPVPLTYELAYGGPLGGPRHRRYARN PVGRGHRAAWWGAAAGPSPRLLWDDHRATRRGAPAGFGPLAAAWAPRARRFGRLDAHAYRQGQLRYRRLPRPDAWNAAPA DQCLDTPLCGDERIRLQGVLPGVDPDHTVIWQLPGGGPQVTLHRPGRGQRVTVQADTLGIDADAGRVWLVWRGWVPEPAP GPGWALRVDADGIGGGER >Mature_338_residues MLPVSVQGPLDARAWVDLDAAGCPGIAVAVKAGFRGGDAARLRLDDDTPALETAERYAGDPAAHAPLTAPDCVPFKHGAE CLLHGAVQVGPGRSQAAACLGVEDAGGRPRFGPKRVWAVAEPPPRASDPPGALEGPVPLTYELAYGGPLGGPRHRRYARN PVGRGHRAAWWGAAAGPSPRLLWDDHRATRRGAPAGFGPLAAAWAPRARRFGRLDAHAYRQGQLRYRRLPRPDAWNAAPA DQCLDTPLCGDERIRLQGVLPGVDPDHTVIWQLPGGGPQVTLHRPGRGQRVTVQADTLGIDADAGRVWLVWRGWVPEPAP GPGWALRVDADGIGGGER
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35801; Mature: 35801
Theoretical pI: Translated: 9.06; Mature: 9.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPVSVQGPLDARAWVDLDAAGCPGIAVAVKAGFRGGDAARLRLDDDTPALETAERYAGD CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCC PAAHAPLTAPDCVPFKHGAECLLHGAVQVGPGRSQAAACLGVEDAGGRPRFGPKRVWAVA CCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEC EPPPRASDPPGALEGPVPLTYELAYGGPLGGPRHRRYARNPVGRGHRAAWWGAAAGPSPR CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCC LLWDDHRATRRGAPAGFGPLAAAWAPRARRFGRLDAHAYRQGQLRYRRLPRPDAWNAAPA EEECCCCHHHCCCCCCCCHHHHHHCHHHHHCCCCCHHHHHCCCHHHHCCCCCCCCCCCCH DQCLDTPLCGDERIRLQGVLPGVDPDHTVIWQLPGGGPQVTLHRPGRGQRVTVQADTLGI HHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEE DADAGRVWLVWRGWVPEPAPGPGWALRVDADGIGGGER ECCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC >Mature Secondary Structure MLPVSVQGPLDARAWVDLDAAGCPGIAVAVKAGFRGGDAARLRLDDDTPALETAERYAGD CCCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHCCC PAAHAPLTAPDCVPFKHGAECLLHGAVQVGPGRSQAAACLGVEDAGGRPRFGPKRVWAVA CCCCCCCCCCCCCCCCCCCCEEEECCEEECCCCCCCEEEEEECCCCCCCCCCCCEEEEEC EPPPRASDPPGALEGPVPLTYELAYGGPLGGPRHRRYARNPVGRGHRAAWWGAAAGPSPR CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCCCCC LLWDDHRATRRGAPAGFGPLAAAWAPRARRFGRLDAHAYRQGQLRYRRLPRPDAWNAAPA EEECCCCHHHCCCCCCCCHHHHHHCHHHHHCCCCCHHHHHCCCHHHHCCCCCCCCCCCCH DQCLDTPLCGDERIRLQGVLPGVDPDHTVIWQLPGGGPQVTLHRPGRGQRVTVQADTLGI HHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCEEEEECCCCCCEEEEEEEEEEE DADAGRVWLVWRGWVPEPAPGPGWALRVDADGIGGGER ECCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA