Definition Halorhodospira halophila SL1 chromosome, complete genome.
Accession NC_008789
Length 2,678,452

Click here to switch to the map view.

The map label for this gene is 121997718

Identifier: 121997718

GI number: 121997718

Start: 1001680

End: 1002489

Strand: Reverse

Name: 121997718

Synonym: Hhal_0927

Alternate gene names: NA

Gene position: 1002489-1001680 (Counterclockwise)

Preceding gene: 121997719

Following gene: 121997716

Centisome position: 37.43

GC content: 62.22

Gene sequence:

>810_bases
ATGGCGTGGACATTCTACCGCCCGCCGTTCATCAGCCGCTGGGTGGCCCGTCGCTCCGCAGGTAAGCGTTGGTTGGTAAA
GGATTCAGAAAGGCTCCCTCCTTTCCCGGTGCTCGATGATGACGGGACGGAGAGGGAGTTAGGGATCTTGGCTGATGATG
AGTACATCCAGCGTCCCTGTAGATGCGACGAGCTAGCGCAGGCATTAATTCCTCTCTTTTTTAGCGGGGCTTTCTTGGCG
GGATCCATTGTCTTCGGAGTAATGGCAGTAGTGTTCGCTGTGGAGGATTTTCCAGCCTGGTATTTCTCGGTCATGGTTTT
CGCTGCCATGTTCTCGGCAGGGCTGGCTGCGCTAACGGCTTTTTCTTTATGGATCTCCCTGCGCCAGCTGCGCAGCTATA
TCCGCATGCGCCGCGGCAAGCGGCCACCGCACACGGTGACCTTCGACCGTCGCAAGCAGACCGTCTCCCTCCCGCCGGTG
GGCGAAGGGGACTACATCGAGGTGCCCTGGCGGGAGCTGGAGGTGATCCCCGAGTACAGCCCAGGGTCCTACGGGGGACA
CTTCGGCGGTATCAGCGCCCTTCGCCCGGACAACCACCTCAGCGTACCCCTGGGGCGGATGCAGGAGGAGTGGGATTTCT
ACTGCTGGTACATGGATCCGCGCAAGCCGCTGCCGCCGGGGCGGGTGTTCGACCCCTACCGCCAGCGGGACGATGAGCGC
CGTGCCCGCGAGTACGGCCCGGAGGTGCTGCACCGCTACCCAAGCGCCCTAACCGACGGCACCCTCAACGGCCTGACCTT
TTGGCGCTAA

Upstream 100 bases:

>100_bases
GGCCAAGGCGGCGGTGGCGCCCCGTGCGCTGACCGTGGACGAGGTGCTCAGGGAAGAGGCGGCCGGGAGCCGGTCGCAGG
GGTGACAGGGAGGTCCGGAG

Downstream 100 bases:

>100_bases
TGGGCGTGCCAGGGCTACGCGGTCATCAGTCCGCCGGCCAGCCGTGCCGTGCCCACAGCGGCTTCCGACTCCTCGGCCGG
CACCACGGGGACGCCCAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 268

Protein sequence:

>269_residues
MAWTFYRPPFISRWVARRSAGKRWLVKDSERLPPFPVLDDDGTERELGILADDEYIQRPCRCDELAQALIPLFFSGAFLA
GSIVFGVMAVVFAVEDFPAWYFSVMVFAAMFSAGLAALTAFSLWISLRQLRSYIRMRRGKRPPHTVTFDRRKQTVSLPPV
GEGDYIEVPWRELEVIPEYSPGSYGGHFGGISALRPDNHLSVPLGRMQEEWDFYCWYMDPRKPLPPGRVFDPYRQRDDER
RAREYGPEVLHRYPSALTDGTLNGLTFWR

Sequences:

>Translated_269_residues
MAWTFYRPPFISRWVARRSAGKRWLVKDSERLPPFPVLDDDGTERELGILADDEYIQRPCRCDELAQALIPLFFSGAFLA
GSIVFGVMAVVFAVEDFPAWYFSVMVFAAMFSAGLAALTAFSLWISLRQLRSYIRMRRGKRPPHTVTFDRRKQTVSLPPV
GEGDYIEVPWRELEVIPEYSPGSYGGHFGGISALRPDNHLSVPLGRMQEEWDFYCWYMDPRKPLPPGRVFDPYRQRDDER
RAREYGPEVLHRYPSALTDGTLNGLTFWR
>Mature_268_residues
AWTFYRPPFISRWVARRSAGKRWLVKDSERLPPFPVLDDDGTERELGILADDEYIQRPCRCDELAQALIPLFFSGAFLAG
SIVFGVMAVVFAVEDFPAWYFSVMVFAAMFSAGLAALTAFSLWISLRQLRSYIRMRRGKRPPHTVTFDRRKQTVSLPPVG
EGDYIEVPWRELEVIPEYSPGSYGGHFGGISALRPDNHLSVPLGRMQEEWDFYCWYMDPRKPLPPGRVFDPYRQRDDERR
AREYGPEVLHRYPSALTDGTLNGLTFWR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31096; Mature: 30965

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWTFYRPPFISRWVARRSAGKRWLVKDSERLPPFPVLDDDGTERELGILADDEYIQRPC
CCCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECHHHHHCCC
RCDELAQALIPLFFSGAFLAGSIVFGVMAVVFAVEDFPAWYFSVMVFAAMFSAGLAALTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSLWISLRQLRSYIRMRRGKRPPHTVTFDRRKQTVSLPPVGEGDYIEVPWRELEVIPEYS
HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCEEECCHHHHEECCCCC
PGSYGGHFGGISALRPDNHLSVPLGRMQEEWDFYCWYMDPRKPLPPGRVFDPYRQRDDER
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCHHH
RAREYGPEVLHRYPSALTDGTLNGLTFWR
HHHHCCHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AWTFYRPPFISRWVARRSAGKRWLVKDSERLPPFPVLDDDGTERELGILADDEYIQRPC
CCCCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCEEECHHHHHCCC
RCDELAQALIPLFFSGAFLAGSIVFGVMAVVFAVEDFPAWYFSVMVFAAMFSAGLAALTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSLWISLRQLRSYIRMRRGKRPPHTVTFDRRKQTVSLPPVGEGDYIEVPWRELEVIPEYS
HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCEECCCCCCCCCEEECCHHHHEECCCCC
PGSYGGHFGGISALRPDNHLSVPLGRMQEEWDFYCWYMDPRKPLPPGRVFDPYRQRDDER
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCHHH
RAREYGPEVLHRYPSALTDGTLNGLTFWR
HHHHCCHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA