| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997714
Identifier: 121997714
GI number: 121997714
Start: 996893
End: 997510
Strand: Reverse
Name: 121997714
Synonym: Hhal_0923
Alternate gene names: NA
Gene position: 997510-996893 (Counterclockwise)
Preceding gene: 121997716
Following gene: 121997713
Centisome position: 37.24
GC content: 72.33
Gene sequence:
>618_bases ATGAAAATTGCGGTGTTTGGTGGGACCCGCGGCGTCGGGGCCGAGGTGGTGCGCCAGGCCCTGGGGCGCGGATGGCGGTG CCGGGTGCTGGCGCGCAGCGCCGATCGGGTGCCGGAGCTGCCCGGGGTCGAGGTGGTGGTCGGCGACGTGCTCGATCCCG AGGCCGTGGGCCGGGCCCTCTACGACTGCGATGGCGCGGTCATCGCCCTGGGGCAGACCCGTCGCAACCCGCCGCGGTTG TGCAGTGAGGGCACCCGGGTGATCGTCGAGGCCATGCAGCAGCAGGGCGTCCCGCGGGTGGTGGCGGTCTCGGCCATGGG GGTGGGGGACAGCTACGCCCAGGTGTCGGTGGTCTTCCGGCTGCTGATCCGCACCCTGATGAAGGGTCTGATGACGGATA AGGAGCGCCTCGAGCAGGTCCTGGCTGCCAGCGATCGCGACTGGGTGGTGGTGCGCCCCGGGCGGCTGACCAACCGACCG GGGCGGGGCGAGTGGCGCGCCGGCACGGATCACGACACCGGCGCCGGGTCGGTCAGCCGGGCCGATGTGGCGACGTTCCT GCTCGAGCAGCTGGGCGACGACCGTTACCTGCGTCAGGCGCCGTACATCACCGGGTGA
Upstream 100 bases:
>100_bases AGCGTCGGGCGGTAACCTGGGGCGCCAAATTTTGGGGGCGCCTCTGCAAACACGGGTGGACTGTAGCACACTCAACTTCC CAAGGGGAGGAAAATCATCT
Downstream 100 bases:
>100_bases GGACCGGTGCCAGCGCCTGGGTCGACCGGTGGTGCTGTGGCGCCGTGGTCACGCCGGCGGCGGCTGGCTACTATGGGCGG TGTATGAGGTCCATCGAGCC
Product: 3-beta hydroxysteroid dehydrogenase/isomerase
Products: NA
Alternate protein names: 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; NmrA Family Protein; Flavin Reductase; Secreted Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase Family; Nucleoside-Diphosphate-Sugar Epimerases; Oxidoreductase; LOW QUALITY PROTEIN NAD-Dependent Epimerase/Dehydratase; NAD-Dependent Epimerase/Dehydratase Family Protein; Nmra Family Protein; NAD Dependent Epimerase/Dehydratase Family; NAD Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase; NADH-Flavin Reductase
Number of amino acids: Translated: 205; Mature: 205
Protein sequence:
>205_residues MKIAVFGGTRGVGAEVVRQALGRGWRCRVLARSADRVPELPGVEVVVGDVLDPEAVGRALYDCDGAVIALGQTRRNPPRL CSEGTRVIVEAMQQQGVPRVVAVSAMGVGDSYAQVSVVFRLLIRTLMKGLMTDKERLEQVLAASDRDWVVVRPGRLTNRP GRGEWRAGTDHDTGAGSVSRADVATFLLEQLGDDRYLRQAPYITG
Sequences:
>Translated_205_residues MKIAVFGGTRGVGAEVVRQALGRGWRCRVLARSADRVPELPGVEVVVGDVLDPEAVGRALYDCDGAVIALGQTRRNPPRL CSEGTRVIVEAMQQQGVPRVVAVSAMGVGDSYAQVSVVFRLLIRTLMKGLMTDKERLEQVLAASDRDWVVVRPGRLTNRP GRGEWRAGTDHDTGAGSVSRADVATFLLEQLGDDRYLRQAPYITG >Mature_205_residues MKIAVFGGTRGVGAEVVRQALGRGWRCRVLARSADRVPELPGVEVVVGDVLDPEAVGRALYDCDGAVIALGQTRRNPPRL CSEGTRVIVEAMQQQGVPRVVAVSAMGVGDSYAQVSVVFRLLIRTLMKGLMTDKERLEQVLAASDRDWVVVRPGRLTNRP GRGEWRAGTDHDTGAGSVSRADVATFLLEQLGDDRYLRQAPYITG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI4502419, Length=206, Percent_Identity=33.495145631068, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI161078145, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=9e-13, Organism=Drosophila melanogaster, GI24645509, Length=204, Percent_Identity=27.4509803921569, Blast_Score=70, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22197; Mature: 22197
Theoretical pI: Translated: 9.27; Mature: 9.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIAVFGGTRGVGAEVVRQALGRGWRCRVLARSADRVPELPGVEVVVGDVLDPEAVGRAL CEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCEEEECCCCCHHHHHHHH YDCDGAVIALGQTRRNPPRLCSEGTRVIVEAMQQQGVPRVVAVSAMGVGDSYAQVSVVFR HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH LLIRTLMKGLMTDKERLEQVLAASDRDWVVVRPGRLTNRPGRGEWRAGTDHDTGAGSVSR HHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH ADVATFLLEQLGDDRYLRQAPYITG HHHHHHHHHHHCCCHHHHCCCCCCC >Mature Secondary Structure MKIAVFGGTRGVGAEVVRQALGRGWRCRVLARSADRVPELPGVEVVVGDVLDPEAVGRAL CEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCHHCCCCCCCCEEEECCCCCHHHHHHHH YDCDGAVIALGQTRRNPPRLCSEGTRVIVEAMQQQGVPRVVAVSAMGVGDSYAQVSVVFR HCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHH LLIRTLMKGLMTDKERLEQVLAASDRDWVVVRPGRLTNRPGRGEWRAGTDHDTGAGSVSR HHHHHHHHHHCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHH ADVATFLLEQLGDDRYLRQAPYITG HHHHHHHHHHHCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA