| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
Click here to switch to the map view.
The map label for this gene is ybeZ [H]
Identifier: 121997683
GI number: 121997683
Start: 968811
End: 969890
Strand: Reverse
Name: ybeZ [H]
Synonym: Hhal_0892
Alternate gene names: 121997683
Gene position: 969890-968811 (Counterclockwise)
Preceding gene: 121997684
Following gene: 121997682
Centisome position: 36.21
GC content: 70.0
Gene sequence:
>1080_bases GTGAGCGACCGGCCGTACGCCATCGATCTCGAACTGACCCCAGCCGACAACGAGCGACTGGCGCGCTTGTGCGGGCAGTT CGACGAGAACCTCCGTCAACTCGAGCGGCGCCTGGCGGTGGAGATCCAGAACCAGGGCCACCGCTTCCGCGTCATCGGCG CGGACGACTCGGTCCGCGTCACCCGCCAGGTCCTCGAGGAGCTCTACGAGGCAGCTGCCTCGCAGCATCTGGAGCCGGAG GATGTCCACCTTTATCTTCAGCAGGCGCGGCTGCAGGAGCTCCACGACGAGGTGGCGGAGCCGGACTCGGACTCGGACCC GGGGGAGGGCGCCGACGACACCGCCCCGGTCCCGACGCAGTGGCGCCGCGACGCGCGGGATGAAGAGGCGGCGGTGATCC GCACCCGCAAGACCGTCGTGCGCGGCCGCGGACCGGGGCAGCGGGCCTACGTCCAGCGCATCCGCGACAACGACCTGAGC TTCGGCATCGGGCCGGCCGGTACCGGCAAGACCTTCCTGGCCGTGGCCTGCGCCGTCGAGGCGCTCGAGGCCGAGGAGGT GCGCCGGGTGGTGCTGGTCCGCCCGGCGGTGGAGGCCGGCGAGCGCCTCGGTTTCCTGCCCGGCGACATGGCGCAGAAGG TCGACCCGTACCTGCGGCCGCTCTACGATGCCCTGTTCGAGATGCTCGGCTTCGAGCGGGTCAGCCGCCTGATCGAGCGC AACGTCATCGAGGTGGCGCCCCTGGCGTTCATGCGTGGCCGCACCCTGAACCACGCCTTCGTCATCCTCGACGAGGCGCA GAACGCCACGGTCGAGCAGATGAAGATGTTCCTCACACGCATCGGCTTTGGCTCCACGGCGGTGGTCACCGGCGACGTTA CCCAGATCGACCTGCCGCCGGATAAGCCCTCCGGGCTGCGCGACGCGGTGGAGGTGCTCCACGAGGTGGACGGGGTCAGC TTCACCTTCTTCGCCGCCACGGACGTAGTGCGTCATCCGCTGGTCCAGCGCATCGTCGAGGCGTACGATTCGCGGAGCCG CCAGATCGGCGGCCAGGGCACGGGCAAGGGGCGCAAGTGA
Upstream 100 bases:
>100_bases GTCGAGATCACCGACGCGCGCACCCACTCGCTCCGGGGCCGCGTCGTCTCCGTGGAGGGCCAAGCCATGCACGCAGCAGT CGGCGCAGGCGGGTAACGGC
Downstream 100 bases:
>100_bases GCGAACTGGAACTGGCCTTCCAGCACGTCGCCGGGGCGTCGGCGCCGGAGGCGGAACGGGTGCAGGCGTGGCTTGAGCCC GTGTTCGAGGCCCACGGCCG
Product: PhoH family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 359; Mature: 358
Protein sequence:
>359_residues MSDRPYAIDLELTPADNERLARLCGQFDENLRQLERRLAVEIQNQGHRFRVIGADDSVRVTRQVLEELYEAAASQHLEPE DVHLYLQQARLQELHDEVAEPDSDSDPGEGADDTAPVPTQWRRDARDEEAAVIRTRKTVVRGRGPGQRAYVQRIRDNDLS FGIGPAGTGKTFLAVACAVEALEAEEVRRVVLVRPAVEAGERLGFLPGDMAQKVDPYLRPLYDALFEMLGFERVSRLIER NVIEVAPLAFMRGRTLNHAFVILDEAQNATVEQMKMFLTRIGFGSTAVVTGDVTQIDLPPDKPSGLRDAVEVLHEVDGVS FTFFAATDVVRHPLVQRIVEAYDSRSRQIGGQGTGKGRK
Sequences:
>Translated_359_residues MSDRPYAIDLELTPADNERLARLCGQFDENLRQLERRLAVEIQNQGHRFRVIGADDSVRVTRQVLEELYEAAASQHLEPE DVHLYLQQARLQELHDEVAEPDSDSDPGEGADDTAPVPTQWRRDARDEEAAVIRTRKTVVRGRGPGQRAYVQRIRDNDLS FGIGPAGTGKTFLAVACAVEALEAEEVRRVVLVRPAVEAGERLGFLPGDMAQKVDPYLRPLYDALFEMLGFERVSRLIER NVIEVAPLAFMRGRTLNHAFVILDEAQNATVEQMKMFLTRIGFGSTAVVTGDVTQIDLPPDKPSGLRDAVEVLHEVDGVS FTFFAATDVVRHPLVQRIVEAYDSRSRQIGGQGTGKGRK >Mature_358_residues SDRPYAIDLELTPADNERLARLCGQFDENLRQLERRLAVEIQNQGHRFRVIGADDSVRVTRQVLEELYEAAASQHLEPED VHLYLQQARLQELHDEVAEPDSDSDPGEGADDTAPVPTQWRRDARDEEAAVIRTRKTVVRGRGPGQRAYVQRIRDNDLSF GIGPAGTGKTFLAVACAVEALEAEEVRRVVLVRPAVEAGERLGFLPGDMAQKVDPYLRPLYDALFEMLGFERVSRLIERN VIEVAPLAFMRGRTLNHAFVILDEAQNATVEQMKMFLTRIGFGSTAVVTGDVTQIDLPPDKPSGLRDAVEVLHEVDGVSF TFFAATDVVRHPLVQRIVEAYDSRSRQIGGQGTGKGRK
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=341, Percent_Identity=56.0117302052786, Blast_Score=364, Evalue=1e-102, Organism=Escherichia coli, GI1787257, Length=223, Percent_Identity=45.2914798206278, Blast_Score=184, Evalue=6e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 40037; Mature: 39905
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDRPYAIDLELTPADNERLARLCGQFDENLRQLERRLAVEIQNQGHRFRVIGADDSVRV CCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH TRQVLEELYEAAASQHLEPEDVHLYLQQARLQELHDEVAEPDSDSDPGEGADDTAPVPTQ HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH WRRDARDEEAAVIRTRKTVVRGRGPGQRAYVQRIRDNDLSFGIGPAGTGKTFLAVACAVE HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH ALEAEEVRRVVLVRPAVEAGERLGFLPGDMAQKVDPYLRPLYDALFEMLGFERVSRLIER HHHHHHHHHHHEECCHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH NVIEVAPLAFMRGRTLNHAFVILDEAQNATVEQMKMFLTRIGFGSTAVVTGDVTQIDLPP HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCC DKPSGLRDAVEVLHEVDGVSFTFFAATDVVRHPLVQRIVEAYDSRSRQIGGQGTGKGRK CCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure SDRPYAIDLELTPADNERLARLCGQFDENLRQLERRLAVEIQNQGHRFRVIGADDSVRV CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHH TRQVLEELYEAAASQHLEPEDVHLYLQQARLQELHDEVAEPDSDSDPGEGADDTAPVPTQ HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHH WRRDARDEEAAVIRTRKTVVRGRGPGQRAYVQRIRDNDLSFGIGPAGTGKTFLAVACAVE HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH ALEAEEVRRVVLVRPAVEAGERLGFLPGDMAQKVDPYLRPLYDALFEMLGFERVSRLIER HHHHHHHHHHHEECCHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH NVIEVAPLAFMRGRTLNHAFVILDEAQNATVEQMKMFLTRIGFGSTAVVTGDVTQIDLPP HHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCEEEECCC DKPSGLRDAVEVLHEVDGVSFTFFAATDVVRHPLVQRIVEAYDSRSRQIGGQGTGKGRK CCCCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]