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The map label for this gene is ybeY [C]

Identifier: 121997682

GI number: 121997682

Start: 968350

End: 968814

Strand: Reverse

Name: ybeY [C]

Synonym: Hhal_0891

Alternate gene names: 121997682

Gene position: 968814-968350 (Counterclockwise)

Preceding gene: 121997683

Following gene: 121997681

Centisome position: 36.17

GC content: 72.26

Gene sequence:

>465_bases
GTGAGCGAACTGGAACTGGCCTTCCAGCACGTCGCCGGGGCGTCGGCGCCGGAGGCGGAACGGGTGCAGGCGTGGCTTGA
GCCCGTGTTCGAGGCCCACGGCCGCGGCGGTGAGCTCACGGTGCGCATCGTCGACGAAGACGAGTCCCGGGCGCTCAACC
GCGACTACCGCGGGCGGGACAAGCCCACCAATGTGCTCTCGTTCCCCTGCGAACTGCCCCCAGGGCTGCCGGCCGAGGCG
GCGCAGATCCTGGGTGATCTGGTCGTCTGCGCCCCGGTGGTGGCCCGCGAGGCCGCCGAGCAGGGCAAGCCCGAGGCCGA
CCACTGGGCGCACATGCTGGTCCACGGTGCTCTGCATCTGCTGGGCTACGACCACGAGGACCCGGCGCAGGCCGAGCGGA
TGGAGGCCGAGGAGCGCCGCATCCTGGCCGCGCTCGGGGTGCCCGATCCCTACCAGGAGCGTTGA

Upstream 100 bases:

>100_bases
CCACGGACGTAGTGCGTCATCCGCTGGTCCAGCGCATCGTCGAGGCGTACGATTCGCGGAGCCGCCAGATCGGCGGCCAG
GGCACGGGCAAGGGGCGCAA

Downstream 100 bases:

>100_bases
AACAGGCAATGCCCGACGGAGAAGCGAACAGTAGCAACGGCGCCGGCGAGAGCGTCTCATGGCGTGATCGCCTGCGCCGG
CTAGTCACCCAGGTGGAGCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 153

Protein sequence:

>154_residues
MSELELAFQHVAGASAPEAERVQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRDKPTNVLSFPCELPPGLPAEA
AQILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHLLGYDHEDPAQAERMEAEERRILAALGVPDPYQER

Sequences:

>Translated_154_residues
MSELELAFQHVAGASAPEAERVQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRDKPTNVLSFPCELPPGLPAEA
AQILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHLLGYDHEDPAQAERMEAEERRILAALGVPDPYQER
>Mature_153_residues
SELELAFQHVAGASAPEAERVQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRDKPTNVLSFPCELPPGLPAEAA
QILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHLLGYDHEDPAQAERMEAEERRILAALGVPDPYQER

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=149, Percent_Identity=53.6912751677852, Blast_Score=147, Evalue=4e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_HALHL (A1WVF5)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002469.1
- ProteinModelPortal:   A1WVF5
- SMR:   A1WVF5
- STRING:   A1WVF5
- GeneID:   4710870
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_0891
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   EIYISID
- PhylomeDB:   A1WVF5
- BioCyc:   HHAL349124:HHAL_0891-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16945; Mature: 16814

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELELAFQHVAGASAPEAERVQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRD
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCC
KPTNVLSFPCELPPGLPAEAAQILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHL
CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGYDHEDPAQAERMEAEERRILAALGVPDPYQER
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
SELELAFQHVAGASAPEAERVQAWLEPVFEAHGRGGELTVRIVDEDESRALNRDYRGRD
CHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCCCCCCC
KPTNVLSFPCELPPGLPAEAAQILGDLVVCAPVVAREAAEQGKPEADHWAHMLVHGALHL
CCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
LGYDHEDPAQAERMEAEERRILAALGVPDPYQER
HCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA