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The map label for this gene is rpoA

Identifier: 121997624

GI number: 121997624

Start: 914449

End: 915447

Strand: Reverse

Name: rpoA

Synonym: Hhal_0833

Alternate gene names: 121997624

Gene position: 915447-914449 (Counterclockwise)

Preceding gene: 121997625

Following gene: 121997623

Centisome position: 34.18

GC content: 66.57

Gene sequence:

>999_bases
ATGAAGGGGTACCTGAAGGACTTTCTCAAGCCGCGCTCGGTCGAGATCGAGCCGCTCTCGGACAACCGCGCCAAGGTGGT
CCTGGAGCCGCTGGAGCGGGGCTTTGGCCACACGCTGGGCAACGCCCTGCGGCGGCTGCTGCTCTCGTCCATGCCCGGGA
CTGCGGTCACCGAGGTGGAGATCGAGGGCGTACAGCACGAGTACACGGCGGTGGAGGGCATCCACGAGGACACTGTGGAC
ATCCTCCTCAACCTCAAGGACCTCGCCGTGCGCCTCAACGAGCGTGACTCGGTGACGCTCAGCGTCGAGAAGCAGGGGCC
GGGTTCGGTGACGGCGGCGGACATCGCCACCGATCACGACGTGGAGATCCAGAATCCGGATCTGCACATCGCCACGATCA
CCCACGAGCAGCCGTTCAAGGCGTCGCTGAAGATCGAGCGCGGCCGCGGCTACCTGCCGGTCACCGCGCGCGAGGAGGAA
GACACCCGCACCATCGGTCACCTGGCCCTGGATGCGAGCTTCAGCCCGGTCCGCCGCGTCTCCTACGCGGTCGAGAGCGC
CCGTGTCGAGCAGCGCACTGACCTGGACAAGCTCGTCCTGGACGTCGAGACCAACGGCGTGGTGACGCCCGAGGAGGCGG
TGAAATTCGCGGCCAGCCTGCTGCGTGACCAGCTGTCGGTGTTCGTCGACCTCGAGGGTGGGCTGCTGGAGGGCGGCGAC
GAGCAGGAAGAGCCGGAGATCGACCCGGTGCTGCTGCGTCCCATCGACGACCTCGAGCTCACGGTCCGTTCGGCCAACTG
CCTCAAGGCTGAGAGCATCCACTTCGTGGGTGATCTGGTTCAGCGCACTGAGGTCGAGCTGCTCAAGACGCCGAACCTCG
GCAAGAAGTCGCTCAACGAGATCAAGGACACCCTGGCCGAGCACGGGCTGTCGCTGGGCATGCAACTCGATAACTGGCCG
CCGCCGTCCCTCGGGGACCGCGCCCGTATCGCCGGCTAA

Upstream 100 bases:

>100_bases
AAGCAGGCCCCGGACCGCGCCGATCTGTCGCAAGAAATCAACGAATCGCTGATCGTCGAGCTGTACTCGAAGTAACAGCC
GCAACTGCAAGGTGTCGTCC

Downstream 100 bases:

>100_bases
ACTGTCAAAGGATCCACGTCATGCGCCATCGTAAAGCCGGACGTCACCTCAATCGTGACAACGCACACCGCAAGGCGATG
TTCAAGAACCTCGCCGCTGC

Product: DNA-directed RNA polymerase subunit alpha

Products: NA

Alternate protein names: RNAP subunit alpha; RNA polymerase subunit alpha; Transcriptase subunit alpha

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MKGYLKDFLKPRSVEIEPLSDNRAKVVLEPLERGFGHTLGNALRRLLLSSMPGTAVTEVEIEGVQHEYTAVEGIHEDTVD
ILLNLKDLAVRLNERDSVTLSVEKQGPGSVTAADIATDHDVEIQNPDLHIATITHEQPFKASLKIERGRGYLPVTAREEE
DTRTIGHLALDASFSPVRRVSYAVESARVEQRTDLDKLVLDVETNGVVTPEEAVKFAASLLRDQLSVFVDLEGGLLEGGD
EQEEPEIDPVLLRPIDDLELTVRSANCLKAESIHFVGDLVQRTEVELLKTPNLGKKSLNEIKDTLAEHGLSLGMQLDNWP
PPSLGDRARIAG

Sequences:

>Translated_332_residues
MKGYLKDFLKPRSVEIEPLSDNRAKVVLEPLERGFGHTLGNALRRLLLSSMPGTAVTEVEIEGVQHEYTAVEGIHEDTVD
ILLNLKDLAVRLNERDSVTLSVEKQGPGSVTAADIATDHDVEIQNPDLHIATITHEQPFKASLKIERGRGYLPVTAREEE
DTRTIGHLALDASFSPVRRVSYAVESARVEQRTDLDKLVLDVETNGVVTPEEAVKFAASLLRDQLSVFVDLEGGLLEGGD
EQEEPEIDPVLLRPIDDLELTVRSANCLKAESIHFVGDLVQRTEVELLKTPNLGKKSLNEIKDTLAEHGLSLGMQLDNWP
PPSLGDRARIAG
>Mature_332_residues
MKGYLKDFLKPRSVEIEPLSDNRAKVVLEPLERGFGHTLGNALRRLLLSSMPGTAVTEVEIEGVQHEYTAVEGIHEDTVD
ILLNLKDLAVRLNERDSVTLSVEKQGPGSVTAADIATDHDVEIQNPDLHIATITHEQPFKASLKIERGRGYLPVTAREEE
DTRTIGHLALDASFSPVRRVSYAVESARVEQRTDLDKLVLDVETNGVVTPEEAVKFAASLLRDQLSVFVDLEGGLLEGGD
EQEEPEIDPVLLRPIDDLELTVRSANCLKAESIHFVGDLVQRTEVELLKTPNLGKKSLNEIKDTLAEHGLSLGMQLDNWP
PPSLGDRARIAG

Specific function: DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

COG id: COG0202

COG function: function code K; DNA-directed RNA polymerase, alpha subunit/40 kD subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase alpha chain family

Homologues:

Organism=Escherichia coli, GI1789690, Length=329, Percent_Identity=63.2218844984802, Blast_Score=412, Evalue=1e-116,

Paralogues:

None

Copy number: 850 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 560 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 6847 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 7,000 Molecules/Cell In: Glucose minimal media

Swissprot (AC and ID): RPOA_HALHL (A1WV97)

Other databases:

- EMBL:   CP000544
- RefSeq:   YP_001002411.1
- ProteinModelPortal:   A1WV97
- STRING:   A1WV97
- GeneID:   4711402
- GenomeReviews:   CP000544_GR
- KEGG:   hha:Hhal_0833
- eggNOG:   COG0202
- HOGENOM:   HBG430844
- OMA:   FGTTLGN
- PhylomeDB:   A1WV97
- ProtClustDB:   PRK05182
- BioCyc:   HHAL349124:HHAL_0833-MONOMER
- HAMAP:   MF_00059
- InterPro:   IPR011261
- InterPro:   IPR011262
- InterPro:   IPR009025
- InterPro:   IPR011263
- InterPro:   IPR011260
- InterPro:   IPR011773
- Gene3D:   G3DSA:2.170.120.12
- ProDom:   PD001179
- SMART:   SM00662
- TIGRFAMs:   TIGR02027

Pfam domain/function: PF01000 RNA_pol_A_bac; PF03118 RNA_pol_A_CTD; PF01193 RNA_pol_L; SSF47789 RNAP_alpha_C; SSF56553 RNAP_insert; SSF55257 RNAP_RBP11-like

EC number: =2.7.7.6

Molecular weight: Translated: 36550; Mature: 36550

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGYLKDFLKPRSVEIEPLSDNRAKVVLEPLERGFGHTLGNALRRLLLSSMPGTAVTEVE
CCCHHHHHCCCCCEEEEECCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEE
IEGVQHEYTAVEGIHEDTVDILLNLKDLAVRLNERDSVTLSVEKQGPGSVTAADIATDHD
ECCCCHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCEEEEECCCCCC
VEIQNPDLHIATITHEQPFKASLKIERGRGYLPVTAREEEDTRTIGHLALDASFSPVRRV
CEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHEEECCCCCHHHHH
SYAVESARVEQRTDLDKLVLDVETNGVVTPEEAVKFAASLLRDQLSVFVDLEGGLLEGGD
HHHHHHHHHHHHCCHHHEEEEECCCCEECHHHHHHHHHHHHHHHHEEEEEECCCEECCCC
EQEEPEIDPVLLRPIDDLELTVRSANCLKAESIHFVGDLVQRTEVELLKTPNLGKKSLNE
CCCCCCCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IKDTLAEHGLSLGMQLDNWPPPSLGDRARIAG
HHHHHHHCCCEECCEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKGYLKDFLKPRSVEIEPLSDNRAKVVLEPLERGFGHTLGNALRRLLLSSMPGTAVTEVE
CCCHHHHHCCCCCEEEEECCCCCCEEEHHHHHHCCCHHHHHHHHHHHHHCCCCCEEEEEE
IEGVQHEYTAVEGIHEDTVDILLNLKDLAVRLNERDSVTLSVEKQGPGSVTAADIATDHD
ECCCCHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCEEEEEECCCCCCEEEEECCCCCC
VEIQNPDLHIATITHEQPFKASLKIERGRGYLPVTAREEEDTRTIGHLALDASFSPVRRV
CEEECCCEEEEEECCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHEEECCCCCHHHHH
SYAVESARVEQRTDLDKLVLDVETNGVVTPEEAVKFAASLLRDQLSVFVDLEGGLLEGGD
HHHHHHHHHHHHCCHHHEEEEECCCCEECHHHHHHHHHHHHHHHHEEEEEECCCEECCCC
EQEEPEIDPVLLRPIDDLELTVRSANCLKAESIHFVGDLVQRTEVELLKTPNLGKKSLNE
CCCCCCCCCEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
IKDTLAEHGLSLGMQLDNWPPPSLGDRARIAG
HHHHHHHCCCEECCEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA