Click here to switch to the map view.

The map label for this gene is yfgC [H]

Identifier: 121997612

GI number: 121997612

Start: 902573

End: 903871

Strand: Reverse

Name: yfgC [H]

Synonym: Hhal_0821

Alternate gene names: 121997612

Gene position: 903871-902573 (Counterclockwise)

Preceding gene: 121997613

Following gene: 121997610

Centisome position: 33.75

GC content: 72.9

Gene sequence:

>1299_bases
ATGGACGGCAGACGGGCGTTTCAATGGCTGATCCCGGCGGTGCTATTGGCGCTGAGCGTGGCTAGCTGCGCCACCAACCC
GGTCACCGGCGAGCGGGAACTGCGGCTGATCTCCGAGGGCGAGGAGGTCGCCATGGGCGAGCAGCACTACGAGCCCACCC
TGCAGAGCATGGGCGGACGCTACAACGCCGACCCGGACCTGGTCGCCTACGTCGATGAGGTCGGCCAGCGGGTGGCCGCC
GAGAGCCACCGCCCGGGGCTGCCCTACGAGTTCGTGGTGCTCAACGACGGCACCCCCAACGCCTGGGCCCTGCCCGGCGG
TAAGATCGCCATCAACCGTGGCCTGCTCACCGAGATGGAGAATGAGGCCGAGCTGGCCGCGGTGCTTGGCCACGAGATCG
TCCACTCCGCCGCCCGCCACGGCGCCCAGCGCGTCGAGCGCGGGATGATGATGCAGGCCGGGGTGGCCACCGTCGGCCTG
GCCACCCAGGACCACCAGCTCTCCGGACTGCTGGTGGCCGGGGCCAGCGTCGGTGTGGGCTTGATCAGTCAGCGCTACTC
GCGGCAGGCGGAGCTAGAGGCGGACGACTACGGCACCCGCTACATGGCCCAGGCCGGCTACGACCCCGAGGCCGCCGTCA
CCCTGCAGGAGAAGTTCGTGCGCCTGGCCGGGGGCGGGGAGTCGAGCTGGCTCGAGGGGCTGTTCGCCAGCCACCCGCCG
TCCCGGGAGCGCGTGCGCGCCAACCGCGAGACCGCCCAGACCCTGCGCGAGGAGCTCGGCGGCGAAGACTGGACCCTGGG
CGAGGAACGCTACGCCCGGCACATGCGGGTCCTGGAGGAGAACCGGGAGGCCTACGCCCAGCTGGATGAGGCGCAGCAGG
CGCTACGCGCCAAGGAGCCCGAGCGGGCCCTGGAGCTGGCCGACGCGGCCATCGACGCCTATCCCGAGGAGGCCGCCTTC
CACGCCGTCCGCGGCCAGGCCCTGGCCCGCATGGGCGAGGAGGCATCGGCCATCGCCGCCCTGGATGCCGCCATTGAGCG
CAACGACGGCTACTTCAGCTACCACCTCGACCGCGGCCTGCTGCACCGGGCCCGCGGCGACGACGAGCGCGCCCGCACGG
ACCTGGAGCGCTCGGCCAGCCTGCTGCCCACCGCGCCCGCCCACCTGGCCCTGGGCCAGCTGGCCGAGGCCGACGGCGCC
CGGGCGGACGCCATCGGCCACTACGAGAAGGCGGCCAGTGCGGAAGGCTTCTTCGGGGAGCGGGCGCGGGAGGCGCTCAG
CCGTCTGCAGGACGGCTGA

Upstream 100 bases:

>100_bases
ATCACCGCCGAGCAGCTGCGCGAGGCGCAGGCCGCGGGTGCGCTATAGTCGAAGACGGATGACATCGGCAAAGGAGCCCG
GCACGGGCGGAGGCGAAGGG

Downstream 100 bases:

>100_bases
GCGCCTCCCACGCCGGGGGACGGGTTCAGATCTCGAACTCGTCGATGCCGCCGCGGACGTCGTTGAGCAGGAAGAGGATG
TTCTCCTTGATCTCGTCCTG

Product: peptidase M48, Ste24p

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 432; Mature: 432

Protein sequence:

>432_residues
MDGRRAFQWLIPAVLLALSVASCATNPVTGERELRLISEGEEVAMGEQHYEPTLQSMGGRYNADPDLVAYVDEVGQRVAA
ESHRPGLPYEFVVLNDGTPNAWALPGGKIAINRGLLTEMENEAELAAVLGHEIVHSAARHGAQRVERGMMMQAGVATVGL
ATQDHQLSGLLVAGASVGVGLISQRYSRQAELEADDYGTRYMAQAGYDPEAAVTLQEKFVRLAGGGESSWLEGLFASHPP
SRERVRANRETAQTLREELGGEDWTLGEERYARHMRVLEENREAYAQLDEAQQALRAKEPERALELADAAIDAYPEEAAF
HAVRGQALARMGEEASAIAALDAAIERNDGYFSYHLDRGLLHRARGDDERARTDLERSASLLPTAPAHLALGQLAEADGA
RADAIGHYEKAASAEGFFGERAREALSRLQDG

Sequences:

>Translated_432_residues
MDGRRAFQWLIPAVLLALSVASCATNPVTGERELRLISEGEEVAMGEQHYEPTLQSMGGRYNADPDLVAYVDEVGQRVAA
ESHRPGLPYEFVVLNDGTPNAWALPGGKIAINRGLLTEMENEAELAAVLGHEIVHSAARHGAQRVERGMMMQAGVATVGL
ATQDHQLSGLLVAGASVGVGLISQRYSRQAELEADDYGTRYMAQAGYDPEAAVTLQEKFVRLAGGGESSWLEGLFASHPP
SRERVRANRETAQTLREELGGEDWTLGEERYARHMRVLEENREAYAQLDEAQQALRAKEPERALELADAAIDAYPEEAAF
HAVRGQALARMGEEASAIAALDAAIERNDGYFSYHLDRGLLHRARGDDERARTDLERSASLLPTAPAHLALGQLAEADGA
RADAIGHYEKAASAEGFFGERAREALSRLQDG
>Mature_432_residues
MDGRRAFQWLIPAVLLALSVASCATNPVTGERELRLISEGEEVAMGEQHYEPTLQSMGGRYNADPDLVAYVDEVGQRVAA
ESHRPGLPYEFVVLNDGTPNAWALPGGKIAINRGLLTEMENEAELAAVLGHEIVHSAARHGAQRVERGMMMQAGVATVGL
ATQDHQLSGLLVAGASVGVGLISQRYSRQAELEADDYGTRYMAQAGYDPEAAVTLQEKFVRLAGGGESSWLEGLFASHPP
SRERVRANRETAQTLREELGGEDWTLGEERYARHMRVLEENREAYAQLDEAQQALRAKEPERALELADAAIDAYPEEAAF
HAVRGQALARMGEEASAIAALDAAIERNDGYFSYHLDRGLLHRARGDDERARTDLERSASLLPTAPAHLALGQLAEADGA
RADAIGHYEKAASAEGFFGERAREALSRLQDG

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=278, Percent_Identity=27.3381294964029, Blast_Score=98, Evalue=1e-21,
Organism=Escherichia coli, GI87081800, Length=171, Percent_Identity=32.1637426900585, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI87082185, Length=258, Percent_Identity=28.2945736434109, Blast_Score=71, Evalue=2e-13,
Organism=Saccharomyces cerevisiae, GI6322940, Length=165, Percent_Identity=30.9090909090909, Blast_Score=77, Evalue=6e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 46906; Mature: 46906

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRRAFQWLIPAVLLALSVASCATNPVTGERELRLISEGEEVAMGEQHYEPTLQSMGGR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCHHHCCCHHCCHHHHHCCCC
YNADPDLVAYVDEVGQRVAAESHRPGLPYEFVVLNDGTPNAWALPGGKIAINRGLLTEME
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEECCCCCEEECCCHHHHHC
NEAELAAVLGHEIVHSAARHGAQRVERGMMMQAGVATVGLATQDHQLSGLLVAGASVGVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCEEEEECCHHHHH
LISQRYSRQAELEADDYGTRYMAQAGYDPEAAVTLQEKFVRLAGGGESSWLEGLFASHPP
HHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
SRERVRANRETAQTLREELGGEDWTLGEERYARHMRVLEENREAYAQLDEAQQALRAKEP
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ERALELADAAIDAYPEEAAFHAVRGQALARMGEEASAIAALDAAIERNDGYFSYHLDRGL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH
LHRARGDDERARTDLERSASLLPTAPAHLALGQLAEADGARADAIGHYEKAASAEGFFGE
HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH
RAREALSRLQDG
HHHHHHHHHCCC
>Mature Secondary Structure
MDGRRAFQWLIPAVLLALSVASCATNPVTGERELRLISEGEEVAMGEQHYEPTLQSMGGR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEEECCCCHHHCCCHHCCHHHHHCCCC
YNADPDLVAYVDEVGQRVAAESHRPGLPYEFVVLNDGTPNAWALPGGKIAINRGLLTEME
CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCEECCCCCEEECCCHHHHHC
NEAELAAVLGHEIVHSAARHGAQRVERGMMMQAGVATVGLATQDHQLSGLLVAGASVGVG
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCEEEEECCHHHHH
LISQRYSRQAELEADDYGTRYMAQAGYDPEAAVTLQEKFVRLAGGGESSWLEGLFASHPP
HHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCC
SRERVRANRETAQTLREELGGEDWTLGEERYARHMRVLEENREAYAQLDEAQQALRAKEP
CHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ERALELADAAIDAYPEEAAFHAVRGQALARMGEEASAIAALDAAIERNDGYFSYHLDRGL
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEECCHHH
LHRARGDDERARTDLERSASLLPTAPAHLALGQLAEADGARADAIGHYEKAASAEGFFGE
HHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHH
RAREALSRLQDG
HHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]