| Definition | Halorhodospira halophila SL1 chromosome, complete genome. |
|---|---|
| Accession | NC_008789 |
| Length | 2,678,452 |
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The map label for this gene is 121997609
Identifier: 121997609
GI number: 121997609
Start: 900262
End: 900795
Strand: Reverse
Name: 121997609
Synonym: Hhal_0818
Alternate gene names: NA
Gene position: 900795-900262 (Counterclockwise)
Preceding gene: 121997610
Following gene: 121997608
Centisome position: 33.63
GC content: 75.66
Gene sequence:
>534_bases ATGGCCCCGCGGGCGGCGCCAGACCGCGGTCTCCGCCCCGGCCCGGCGGTATGGCTCGGGCGCTTCCTGCGGGCAGCGGC GGTCCTGCTGCTGCTGTGGCTGATCCTCGCCGAGGGCGCCTTCGGCGGTGTCCTCGGCGCGGCTACGGTGCTCGCCGCCG CCGGGGTGGGCGTCTACTTCGCCGGCCGCCGCATCCACCCCTGGTACCCCCTGCCGGCGCTGCGCTTCGCCGGCTTCTTC CTGGTCCGCTCGCTGATCGGTGCCGTGGACGTCGGCTACCGCGCCGTCCACCCGCGCATGCCCATCCACTGCCACTGGCT GCGTTACGCCGTCAGCCTGCCCGGCGGTGAGCCCCGGGTCGCCCTGGTGGCGGCGGTGAGCCTGCTGCCCGGCACCTTGG CCGCGGATCTGCGCGGCGATATCCTCGTCGTCCACGCCATCACCCCGCAGGCCGAGGACGAGGTGGCGGCGCTGGAGCGC CGCGTCGCCGCGGTCTACGGTCTCAGTGGGACCGCCTCCGGTGCCGCCGCATGA
Upstream 100 bases:
>100_bases TGGCGTGAGGTGGACGGCGGTCGCGACCCGGAGGCCGAGCAGCGCCGCCGCGCCGAGACCGCCGAGCGCGCCCGGGCGCA GGGCGCCGAGCGCTAGCCCC
Downstream 100 bases:
>100_bases GGTAAGCGCCGTGCAGATGCTCGACCTGGGCCTCGCCGTCTTCCTGCTGCTCAATCTCCTCGCCGGGCTGTGGCGCGTTC ACCGCGGCCCCACGGCCGCC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MAPRAAPDRGLRPGPAVWLGRFLRAAAVLLLLWLILAEGAFGGVLGAATVLAAAGVGVYFAGRRIHPWYPLPALRFAGFF LVRSLIGAVDVGYRAVHPRMPIHCHWLRYAVSLPGGEPRVALVAAVSLLPGTLAADLRGDILVVHAITPQAEDEVAALER RVAAVYGLSGTASGAAA
Sequences:
>Translated_177_residues MAPRAAPDRGLRPGPAVWLGRFLRAAAVLLLLWLILAEGAFGGVLGAATVLAAAGVGVYFAGRRIHPWYPLPALRFAGFF LVRSLIGAVDVGYRAVHPRMPIHCHWLRYAVSLPGGEPRVALVAAVSLLPGTLAADLRGDILVVHAITPQAEDEVAALER RVAAVYGLSGTASGAAA >Mature_176_residues APRAAPDRGLRPGPAVWLGRFLRAAAVLLLLWLILAEGAFGGVLGAATVLAAAGVGVYFAGRRIHPWYPLPALRFAGFFL VRSLIGAVDVGYRAVHPRMPIHCHWLRYAVSLPGGEPRVALVAAVSLLPGTLAADLRGDILVVHAITPQAEDEVAALERR VAAVYGLSGTASGAAA
Specific function: Unknown
COG id: COG1863
COG function: function code P; Multisubunit Na+/H+ antiporter, MnhE subunit
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18484; Mature: 18353
Theoretical pI: Translated: 10.61; Mature: 10.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAPRAAPDRGLRPGPAVWLGRFLRAAAVLLLLWLILAEGAFGGVLGAATVLAAAGVGVYF CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHEE AGRRIHPWYPLPALRFAGFFLVRSLIGAVDVGYRAVHPRMPIHCHWLRYAVSLPGGEPRV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHEEECCCCCCHH ALVAAVSLLPGTLAADLRGDILVVHAITPQAEDEVAALERRVAAVYGLSGTASGAAA HHHHHHHHCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure APRAAPDRGLRPGPAVWLGRFLRAAAVLLLLWLILAEGAFGGVLGAATVLAAAGVGVYF CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHEE AGRRIHPWYPLPALRFAGFFLVRSLIGAVDVGYRAVHPRMPIHCHWLRYAVSLPGGEPRV CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEECCCCCEEHHHHHHEEECCCCCCHH ALVAAVSLLPGTLAADLRGDILVVHAITPQAEDEVAALERRVAAVYGLSGTASGAAA HHHHHHHHCCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA