| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is livJ [C]
Identifier: 121611777
GI number: 121611777
Start: 5394515
End: 5395651
Strand: Direct
Name: livJ [C]
Synonym: Veis_4876
Alternate gene names: 121611777
Gene position: 5394515-5395651 (Clockwise)
Preceding gene: 121611766
Following gene: 121611781
Centisome position: 96.91
GC content: 64.91
Gene sequence:
>1137_bases ATGCCGGGACGCAGACGATTTTCCATGGGCCTGGGTGCCGTGGCGCTCGGCGGCTTCCATCTTGCGCGGGCACAGGCAGA AGGCCGCATCGTGCTGGGGCAATCGGCCCCTTTCACCGGCCCTGTGGCGCAACTGGGTGTGCAGTTCAACCTGGGCGCGC AACTCTTTTTCGACCAGCTCAACGCCCAGGGTGGCGTGGGCAGGCGACAGGTGGAACTGCGCACCATGGACGATGGCTAT GAGCCCGACCGCTGTGCCGAAAATACCCGCAAGTTCATTGCCGACGATGTGTTCGCGCTGTTCGGCTACATCGGCACCCC CACCAGTTTGGCCGCGCTGCCGCTGTTCACCCGAGACAAGTTGCCGTTCTTCGGCCCGTTCACCGGGGCCGAGGCGTTGC GCCAGCCGTTCAATCGGCTCATCTTTCATGTGCGCGCTTCGTACTACGACGAGACCGCGCTCATCGTGCGCCACCTGACG CACCTGGGGATGGACAAGATCGCCGTGCTCTACCAGAACGACGCCTATGGCAAGACGGGCCTGGATGGCGTGACCAAGGC GCTTGCCGACCACAAGCTGGTGCCCGTGGCCACCGCCACGGTCGAACGCAATTCCACGGACGTGGCGGCTGCGGTCGACA AACTGGTGCCCGGCATGCCCCACGCCGTGGTGCAGGTCACGACCTATGCGCCGGCCGCAGCCTTTGTGCGCGCCGCGCGC AAGGCGGGTTTTGGCGGCACCTTCCACAACGTATCGTTCGTCGGCGCGCAGGCGCTGGCCGACGAACTGGGATCGGATGC CGCCGGCGTGACGGTGTCACAGGTGGTGCACTCGCCCTACCAAGCCTCACGCCAGATCACGCGCGAGTTTCTCGATGCCA TCAAAAAAGGCGGCAACAAGGTGCAAGCCAACTATTCGAGCGCAGAGGGCTACCTGGCCGCGCGCGTGCTGACCGAGGGC CTGCGCCAGGCGCAAGGCAGCGGCAAGATCACGCGCGAGAACTTCATCACGGGCATCGAAACGATCGGCAGCCACTCGAT CGCGGGCTTTGCGGTGTCGTTCAGCGCCACCGACCATGTCGGATCGAAGTTTGTCGAAATGTCGATGCTGACCGGCGACG GGCGCATGCGCACCTGA
Upstream 100 bases:
>100_bases TCGATCCACCGAAACCACATCTTGTACGCCAATGACTCTACCGTGCTTCGTACCCGATGGCTGTAGCGTGAAGCCCGGCC TCGGCATGCAGGGCCCCATC
Downstream 100 bases:
>100_bases GCCAGCGCATGGGTCGGCGCCATCGGCGTGGATGGGTAAATCAGGGCCAGAGCATCAAAGTTTGTTTTCATTCAACGACT TACGACAGGGCAATCGCATG
Product: extracellular ligand-binding receptor
Products: ADP; phosphate; L-leucine [Cytoplasm]; ADP; L-valine [Cytoplasm]; L-iso-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 378; Mature: 377
Protein sequence:
>378_residues MPGRRRFSMGLGAVALGGFHLARAQAEGRIVLGQSAPFTGPVAQLGVQFNLGAQLFFDQLNAQGGVGRRQVELRTMDDGY EPDRCAENTRKFIADDVFALFGYIGTPTSLAALPLFTRDKLPFFGPFTGAEALRQPFNRLIFHVRASYYDETALIVRHLT HLGMDKIAVLYQNDAYGKTGLDGVTKALADHKLVPVATATVERNSTDVAAAVDKLVPGMPHAVVQVTTYAPAAAFVRAAR KAGFGGTFHNVSFVGAQALADELGSDAAGVTVSQVVHSPYQASRQITREFLDAIKKGGNKVQANYSSAEGYLAARVLTEG LRQAQGSGKITRENFITGIETIGSHSIAGFAVSFSATDHVGSKFVEMSMLTGDGRMRT
Sequences:
>Translated_378_residues MPGRRRFSMGLGAVALGGFHLARAQAEGRIVLGQSAPFTGPVAQLGVQFNLGAQLFFDQLNAQGGVGRRQVELRTMDDGY EPDRCAENTRKFIADDVFALFGYIGTPTSLAALPLFTRDKLPFFGPFTGAEALRQPFNRLIFHVRASYYDETALIVRHLT HLGMDKIAVLYQNDAYGKTGLDGVTKALADHKLVPVATATVERNSTDVAAAVDKLVPGMPHAVVQVTTYAPAAAFVRAAR KAGFGGTFHNVSFVGAQALADELGSDAAGVTVSQVVHSPYQASRQITREFLDAIKKGGNKVQANYSSAEGYLAARVLTEG LRQAQGSGKITRENFITGIETIGSHSIAGFAVSFSATDHVGSKFVEMSMLTGDGRMRT >Mature_377_residues PGRRRFSMGLGAVALGGFHLARAQAEGRIVLGQSAPFTGPVAQLGVQFNLGAQLFFDQLNAQGGVGRRQVELRTMDDGYE PDRCAENTRKFIADDVFALFGYIGTPTSLAALPLFTRDKLPFFGPFTGAEALRQPFNRLIFHVRASYYDETALIVRHLTH LGMDKIAVLYQNDAYGKTGLDGVTKALADHKLVPVATATVERNSTDVAAAVDKLVPGMPHAVVQVTTYAPAAAFVRAARK AGFGGTFHNVSFVGAQALADELGSDAAGVTVSQVVHSPYQASRQITREFLDAIKKGGNKVQANYSSAEGYLAARVLTEGL RQAQGSGKITRENFITGIETIGSHSIAGFAVSFSATDHVGSKFVEMSMLTGDGRMRT
Specific function: Component of an amino-acid transport system (Potential) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the leucine-binding protein family [H]
Homologues:
None
Paralogues:
None
Copy number: 10140 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1160 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 8822 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal med
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001828 - InterPro: IPR000709 [H]
Pfam domain/function: PF01094 ANF_receptor [H]
EC number: NA
Molecular weight: Translated: 40406; Mature: 40275
Theoretical pI: Translated: 9.59; Mature: 9.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGRRRFSMGLGAVALGGFHLARAQAEGRIVLGQSAPFTGPVAQLGVQFNLGAQLFFDQL CCCCCCHHCCCCHHHHCCHHHHHHCCCCCEEEECCCCCCCHHHHHCEEECCCHHHHHHHH NAQGGVGRRQVELRTMDDGYEPDRCAENTRKFIADDVFALFGYIGTPTSLAALPLFTRDK CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCC LPFFGPFTGAEALRQPFNRLIFHVRASYYDETALIVRHLTHLGMDKIAVLYQNDAYGKTG CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC LDGVTKALADHKLVPVATATVERNSTDVAAAVDKLVPGMPHAVVQVTTYAPAAAFVRAAR HHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCHHEEEEECCCHHHHHHHHHH KAGFGGTFHNVSFVGAQALADELGSDAAGVTVSQVVHSPYQASRQITREFLDAIKKGGNK HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE VQANYSSAEGYLAARVLTEGLRQAQGSGKITRENFITGIETIGSHSIAGFAVSFSATDHV EEECCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCEEEEEEEECCCHHH GSKFVEMSMLTGDGRMRT HHHHHEEEEEECCCCCCC >Mature Secondary Structure PGRRRFSMGLGAVALGGFHLARAQAEGRIVLGQSAPFTGPVAQLGVQFNLGAQLFFDQL CCCCCHHCCCCHHHHCCHHHHHHCCCCCEEEECCCCCCCHHHHHCEEECCCHHHHHHHH NAQGGVGRRQVELRTMDDGYEPDRCAENTRKFIADDVFALFGYIGTPTSLAALPLFTRDK CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCEECCC LPFFGPFTGAEALRQPFNRLIFHVRASYYDETALIVRHLTHLGMDKIAVLYQNDAYGKTG CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCC LDGVTKALADHKLVPVATATVERNSTDVAAAVDKLVPGMPHAVVQVTTYAPAAAFVRAAR HHHHHHHHHCCCEEEEEEEEECCCCCHHHHHHHHHCCCCCHHEEEEECCCHHHHHHHHHH KAGFGGTFHNVSFVGAQALADELGSDAAGVTVSQVVHSPYQASRQITREFLDAIKKGGNK HCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHCCCCE VQANYSSAEGYLAARVLTEGLRQAQGSGKITRENFITGIETIGSHSIAGFAVSFSATDHV EEECCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHCCCCEEEEEEEECCCHHH GSKFVEMSMLTGDGRMRT HHHHHEEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-leucine [Periplasm]; H2O; ATP; L-valine [Periplasm]; L-iso-leucine [Periplasm] [C]
Specific reaction: ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA