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The map label for this gene is yfdE [H]

Identifier: 121611544

GI number: 121611544

Start: 5128363

End: 5129643

Strand: Direct

Name: yfdE [H]

Synonym: Veis_4636

Alternate gene names: 121611544

Gene position: 5128363-5129643 (Clockwise)

Preceding gene: 121611541

Following gene: 121611545

Centisome position: 92.12

GC content: 68.31

Gene sequence:

>1281_bases
GTGATCACTCCCTCACGATTATCGAATTTTCAATCATCGGAGAAGGCGATAACGTCGCGCCCAATGAACTTCGAATCCAA
ACAGACAACCGGCCGATCCGCCCCGGCAGCGCCACTGAAGAACGTGCGCGTGATCGACTTGGGGCAGTACATCGCGGGGC
CCGGCGCTGCCATGGTCCTGGCCGAGTTGGGCGCACAGGTGATCAAGATCGAACCGCTTGCGGGCGACCAGGCCCGGCAC
ATCGGCCGCTACGGCGAGTCGATGATCCGCGCCTACAGCCGCGGCAAGCAGTCCATCGCGCTCAACTTGAAGAGCGACGC
GGGTCGCGAGATCGCGTGGCGGCTGATTGCAAACAGCGACGTCGTGATCCAGAACCTGCGCCCCGGCGCCGTCGAGGCGC
TGGGCCTGGGGCCGTCCGCGGTGCGCGAACGGTTTCCCAAGGTCATCTACCTGTCGATCTCGGGCTTCGGGGACCTGGGG
CCTTCGAGCGCGCGTCCCGGCTACGACATCGCGGCACAGGCCGAGAGTGGCTTGATGTCGGTCACGGGCGAGCCGGACCG
CCTCCCGCAGAAGGTGGGGGTACCGATCATCGATGCGGCCGCGGCGCACCTGGGTGCCCAGGCGGTGCTCGCTGCGCTCT
ACGGCCGCGCGCAGACGGGTGTCGGCGAGACGCTGCGTGCGTCGCTGCTCGAGGTGGCGCTGCATCTGCAGGCCACCACG
TGGTGCGACTACCTGGGCGGCGCGCCCGAGCCGACGCGCATCGGCGACGGCCAGCCCAACAACGCGCCCGCGGCCGAGGT
GGTGCCCACGCGCGACGGGCACATCGTGCTGTCTGCCTATGCGGATGAGCACTGGGCGCGGTTCTGTCGTGTGATGGGAC
GCGAGCCGCTCGCGACCGACCCGCGCTTTTGCACCAACGCACTGCGGGTGCAGCACCGCAGTGAGTTGCGCATCGTGCTG
CGTGAATGCCTCTCGTCCTTCACCAGCGAAGAATGCGTGGCGCTGCTGAGCCGCAACCAGATCGTGGTCGGCTTTGTCCG
CAGCTACCAGCAGGTGCTGCAAAGCGCAGACGTGCAGGCCAGCGGAATACTGGTCGATGCACTGGGGGCGGACGGCGAAC
GCTATCCGTCGCTGGCATTGCCCTACCGGCTGGGCGACGCGCCGCGTGCCACGCCGCCCGCCGCACCCGCGTGCGGGGCC
GACACCGATCGCCTCCTGGCCGAGCTCGGGCTTGCGGCGAACGAGATCGACGAACTTCGCCGCGCTGGCGCGGTGGCATG
A

Upstream 100 bases:

>100_bases
CGGCCAGCGCCACGAGCAGCTCAAGGTGTCTCAGGCGCAGCGTTCGGACGAGGCGGTCGGTTTTGGTGTTCATTTCAGGC
CCCATGGGGTATAGCGAATC

Downstream 100 bases:

>100_bases
CCCAGGAAAAGAAGAGCCCCATGAATTCGAAGATCGTTCCCCTCGCGCACGGTTGCGACGCCGTCGTGATCCAGACGCTA
CCGCTGTTCGAGATGATGCG

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 426; Mature: 426

Protein sequence:

>426_residues
MITPSRLSNFQSSEKAITSRPMNFESKQTTGRSAPAAPLKNVRVIDLGQYIAGPGAAMVLAELGAQVIKIEPLAGDQARH
IGRYGESMIRAYSRGKQSIALNLKSDAGREIAWRLIANSDVVIQNLRPGAVEALGLGPSAVRERFPKVIYLSISGFGDLG
PSSARPGYDIAAQAESGLMSVTGEPDRLPQKVGVPIIDAAAAHLGAQAVLAALYGRAQTGVGETLRASLLEVALHLQATT
WCDYLGGAPEPTRIGDGQPNNAPAAEVVPTRDGHIVLSAYADEHWARFCRVMGREPLATDPRFCTNALRVQHRSELRIVL
RECLSSFTSEECVALLSRNQIVVGFVRSYQQVLQSADVQASGILVDALGADGERYPSLALPYRLGDAPRATPPAAPACGA
DTDRLLAELGLAANEIDELRRAGAVA

Sequences:

>Translated_426_residues
MITPSRLSNFQSSEKAITSRPMNFESKQTTGRSAPAAPLKNVRVIDLGQYIAGPGAAMVLAELGAQVIKIEPLAGDQARH
IGRYGESMIRAYSRGKQSIALNLKSDAGREIAWRLIANSDVVIQNLRPGAVEALGLGPSAVRERFPKVIYLSISGFGDLG
PSSARPGYDIAAQAESGLMSVTGEPDRLPQKVGVPIIDAAAAHLGAQAVLAALYGRAQTGVGETLRASLLEVALHLQATT
WCDYLGGAPEPTRIGDGQPNNAPAAEVVPTRDGHIVLSAYADEHWARFCRVMGREPLATDPRFCTNALRVQHRSELRIVL
RECLSSFTSEECVALLSRNQIVVGFVRSYQQVLQSADVQASGILVDALGADGERYPSLALPYRLGDAPRATPPAAPACGA
DTDRLLAELGLAANEIDELRRAGAVA
>Mature_426_residues
MITPSRLSNFQSSEKAITSRPMNFESKQTTGRSAPAAPLKNVRVIDLGQYIAGPGAAMVLAELGAQVIKIEPLAGDQARH
IGRYGESMIRAYSRGKQSIALNLKSDAGREIAWRLIANSDVVIQNLRPGAVEALGLGPSAVRERFPKVIYLSISGFGDLG
PSSARPGYDIAAQAESGLMSVTGEPDRLPQKVGVPIIDAAAAHLGAQAVLAALYGRAQTGVGETLRASLLEVALHLQATT
WCDYLGGAPEPTRIGDGQPNNAPAAEVVPTRDGHIVLSAYADEHWARFCRVMGREPLATDPRFCTNALRVQHRSELRIVL
RECLSSFTSEECVALLSRNQIVVGFVRSYQQVLQSADVQASGILVDALGADGERYPSLALPYRLGDAPRATPPAAPACGA
DTDRLLAELGLAANEIDELRRAGAVA

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=396, Percent_Identity=32.5757575757576, Blast_Score=183, Evalue=3e-46,
Organism=Homo sapiens, GI300863124, Length=331, Percent_Identity=33.5347432024169, Blast_Score=176, Evalue=4e-44,
Organism=Homo sapiens, GI300863126, Length=396, Percent_Identity=30.3030303030303, Blast_Score=150, Evalue=3e-36,
Organism=Homo sapiens, GI13376042, Length=331, Percent_Identity=29.607250755287, Blast_Score=136, Evalue=3e-32,
Organism=Homo sapiens, GI266456254, Length=386, Percent_Identity=26.6839378238342, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42794625, Length=386, Percent_Identity=26.6839378238342, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI266458397, Length=242, Percent_Identity=32.2314049586777, Blast_Score=103, Evalue=4e-22,
Organism=Homo sapiens, GI266458393, Length=242, Percent_Identity=32.2314049586777, Blast_Score=102, Evalue=6e-22,
Organism=Homo sapiens, GI266458395, Length=139, Percent_Identity=36.6906474820144, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI42822893, Length=139, Percent_Identity=36.6906474820144, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI87082093, Length=336, Percent_Identity=31.547619047619, Blast_Score=180, Evalue=2e-46,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=26.9230769230769, Blast_Score=128, Evalue=6e-31,
Organism=Escherichia coli, GI1786222, Length=394, Percent_Identity=24.8730964467005, Blast_Score=92, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=203, Percent_Identity=28.0788177339901, Blast_Score=69, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24648431, Length=399, Percent_Identity=34.8370927318296, Blast_Score=214, Evalue=8e-56,
Organism=Drosophila melanogaster, GI24585488, Length=203, Percent_Identity=32.512315270936, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45244; Mature: 45244

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPSRLSNFQSSEKAITSRPMNFESKQTTGRSAPAAPLKNVRVIDLGQYIAGPGAAMVL
CCCCHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCHHHHH
AELGAQVIKIEPLAGDQARHIGRYGESMIRAYSRGKQSIALNLKSDAGREIAWRLIANSD
HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCC
VVIQNLRPGAVEALGLGPSAVRERFPKVIYLSISGFGDLGPSSARPGYDIAAQAESGLMS
EEEECCCCCCHHEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEE
VTGEPDRLPQKVGVPIIDAAAAHLGAQAVLAALYGRAQTGVGETLRASLLEVALHLQATT
ECCCCHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
WCDYLGGAPEPTRIGDGQPNNAPAAEVVPTRDGHIVLSAYADEHWARFCRVMGREPLATD
HHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHCCCCCCCC
PRFCTNALRVQHRSELRIVLRECLSSFTSEECVALLSRNQIVVGFVRSYQQVLQSADVQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCC
SGILVDALGADGERYPSLALPYRLGDAPRATPPAAPACGADTDRLLAELGLAANEIDELR
CCEEEEECCCCCCCCCCEECCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
RAGAVA
HHCCCC
>Mature Secondary Structure
MITPSRLSNFQSSEKAITSRPMNFESKQTTGRSAPAAPLKNVRVIDLGQYIAGPGAAMVL
CCCCHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHCCCCHHHHH
AELGAQVIKIEPLAGDQARHIGRYGESMIRAYSRGKQSIALNLKSDAGREIAWRLIANSD
HHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEECCCC
VVIQNLRPGAVEALGLGPSAVRERFPKVIYLSISGFGDLGPSSARPGYDIAAQAESGLMS
EEEECCCCCCHHEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEECCCCCCEE
VTGEPDRLPQKVGVPIIDAAAAHLGAQAVLAALYGRAQTGVGETLRASLLEVALHLQATT
ECCCCHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
WCDYLGGAPEPTRIGDGQPNNAPAAEVVPTRDGHIVLSAYADEHWARFCRVMGREPLATD
HHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHCCCCCCCC
PRFCTNALRVQHRSELRIVLRECLSSFTSEECVALLSRNQIVVGFVRSYQQVLQSADVQA
HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCEEEHHHHHHHHHHHHCCCCC
SGILVDALGADGERYPSLALPYRLGDAPRATPPAAPACGADTDRLLAELGLAANEIDELR
CCEEEEECCCCCCCCCCEECCEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHH
RAGAVA
HHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]