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The map label for this gene is dapF [H]

Identifier: 121611462

GI number: 121611462

Start: 5040042

End: 5041190

Strand: Direct

Name: dapF [H]

Synonym: Veis_4553

Alternate gene names: 121611462

Gene position: 5040042-5041190 (Clockwise)

Preceding gene: 121611461

Following gene: 121611463

Centisome position: 90.54

GC content: 67.71

Gene sequence:

>1149_bases
ATGCGCTGTACCAGCTCAAGAGGATGGCGGGCAAATGAAGCGCCGCCAGCCGCAGGCCCGCCGCCTGGCGCCGCAACCCG
TTCCAGCGGCGATAATCGGGCGATGCAGATTCGCTTTACCAAAATGCAAGGCGCGGGCAATGATTTCGTGGTGCTCGACG
AGACCCGGCAGCGCCTGGGGCTGAGCGCAGCCCAGTACCGCTTTTTGGCGGACCGCCACTTTGGCGTCGGGGCCGACCAG
ATTCTCGGCGTGCGGCCGGCGCCGGCCGCAGACATCGACTTCGAGTACATCATCCACAACGCCGATGGCAGCGAGGTGGC
GCAGTGCGGCAATGGCGCGCGCTGCCTGGCGCGCTTTGTGCGCGACAAGGGCCTGTCGGACAAGGAACGACTGCGCGTGC
AAACCCGTGGCGGCGTCATCACCCTGCGGCTCAACCCCGATGGCCGCGTCAGTGTCGACATGGGGCGCGCGCAGTTCGAG
CCCGCCAGCCTGCCCTTCGATGCCTCGGGTCTACAGCCCCTGGCCCAGGGTTTGGCGCAAAAATGGCCTTTGGCGCTAGT
GCCGCGTCATCGGTCAGATGTCGTAGGCTGCGCGCAGCCATCGGAGCGCAGCGCAAGGCGCATCGCGCAGCCCATACCGA
GCGTATTGGCAAGTGATGCAACGCCGCGATGCGGTTCGATGGCCAGCGCAGACCGGCAGATGATCGGTGACGCGACACCA
GAGACACCGGCGCATGGCACCACGGCCACTGTTTGGCTGGTCATCGTTTCCATGGGCAACCCGCATGCGGTGCAGTTGGT
GGACGATGTGGAGCGCGCCCCGGTGCCCGAAATCGGCCCGCTGATCGCCAACCATGCGCGCTTTGCGCAGCGCGTGAACG
CGGGCTTCATGCAGGTCGTCGACCGGGGCCATGTGCGGCTGCGGGTGTTCGAGCGCGGCGCCGGCGAGACCCTGGCCTGC
GGCTCGGGCGCCTGCGCAGCCGTGTCGGCCGGCATCCGCCTGGGGCTGCTGGACTCCGAGGTGCAGGTCGCCATGCGCGG
CGGGCTGGTCAGCGTTGCCTGGAGTGGCGCCGCCACCGACTCCGTTGTCATGACCGGCCCTGCCACCACGGTGTTTGAAG
GCCAGATCGAACTTCCCTCCTGCCCATGA

Upstream 100 bases:

>100_bases
GCCGCCCCGAAAGAAGAACCCGAAAGCAAGAGCGCAAGCCCTGTGGAAGCGGCGCTGGCCGGAATCAACCCCGATGCGCT
CAGCCCGCGCGAGGCGCTCG

Downstream 100 bases:

>100_bases
CCGCTCCTACCCTCCCGCCGATCGTTGCCCCGATCACCGAAGACGATATCGCCCAGTTTCTGCTCCGCACGCCGGGCTTC
TTCGAGCGCCATGCCCAGGT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 382; Mature: 382

Protein sequence:

>382_residues
MRCTSSRGWRANEAPPAAGPPPGAATRSSGDNRAMQIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQ
ILGVRPAPAADIDFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGRAQFE
PASLPFDASGLQPLAQGLAQKWPLALVPRHRSDVVGCAQPSERSARRIAQPIPSVLASDATPRCGSMASADRQMIGDATP
ETPAHGTTATVWLVIVSMGNPHAVQLVDDVERAPVPEIGPLIANHARFAQRVNAGFMQVVDRGHVRLRVFERGAGETLAC
GSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATDSVVMTGPATTVFEGQIELPSCP

Sequences:

>Translated_382_residues
MRCTSSRGWRANEAPPAAGPPPGAATRSSGDNRAMQIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQ
ILGVRPAPAADIDFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGRAQFE
PASLPFDASGLQPLAQGLAQKWPLALVPRHRSDVVGCAQPSERSARRIAQPIPSVLASDATPRCGSMASADRQMIGDATP
ETPAHGTTATVWLVIVSMGNPHAVQLVDDVERAPVPEIGPLIANHARFAQRVNAGFMQVVDRGHVRLRVFERGAGETLAC
GSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATDSVVMTGPATTVFEGQIELPSCP
>Mature_382_residues
MRCTSSRGWRANEAPPAAGPPPGAATRSSGDNRAMQIRFTKMQGAGNDFVVLDETRQRLGLSAAQYRFLADRHFGVGADQ
ILGVRPAPAADIDFEYIIHNADGSEVAQCGNGARCLARFVRDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGRAQFE
PASLPFDASGLQPLAQGLAQKWPLALVPRHRSDVVGCAQPSERSARRIAQPIPSVLASDATPRCGSMASADRQMIGDATP
ETPAHGTTATVWLVIVSMGNPHAVQLVDDVERAPVPEIGPLIANHARFAQRVNAGFMQVVDRGHVRLRVFERGAGETLAC
GSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATDSVVMTGPATTVFEGQIELPSCP

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=129, Percent_Identity=56.5891472868217, Blast_Score=145, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 40370; Mature: 40370

Theoretical pI: Translated: 8.23; Mature: 8.23

Prosite motif: PS01326 DAP_EPIMERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRCTSSRGWRANEAPPAAGPPPGAATRSSGDNRAMQIRFTKMQGAGNDFVVLDETRQRLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCHHHHHC
LSAAQYRFLADRHFGVGADQILGVRPAPAADIDFEYIIHNADGSEVAQCGNGARCLARFV
CCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHH
RDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGRAQFEPASLPFDASGLQPLAQGLAQ
HHCCCCHHHHEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
KWPLALVPRHRSDVVGCAQPSERSARRIAQPIPSVLASDATPRCGSMASADRQMIGDATP
HCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
ETPAHGTTATVWLVIVSMGNPHAVQLVDDVERAPVPEIGPLIANHARFAQRVNAGFMQVV
CCCCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DRGHVRLRVFERGAGETLACGSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATD
HCCCEEEEEEECCCCCEEECCCCCHHHHHCCEEEEEECHHHHHHHCCCEEEEEECCCCCC
SVVMTGPATTVFEGQIELPSCP
CEEEECCCCEEEECEEECCCCC
>Mature Secondary Structure
MRCTSSRGWRANEAPPAAGPPPGAATRSSGDNRAMQIRFTKMQGAGNDFVVLDETRQRLG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEECCHHHHHC
LSAAQYRFLADRHFGVGADQILGVRPAPAADIDFEYIIHNADGSEVAQCGNGARCLARFV
CCHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHCCCHHHHHHHHH
RDKGLSDKERLRVQTRGGVITLRLNPDGRVSVDMGRAQFEPASLPFDASGLQPLAQGLAQ
HHCCCCHHHHEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHH
KWPLALVPRHRSDVVGCAQPSERSARRIAQPIPSVLASDATPRCGSMASADRQMIGDATP
HCCEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCC
ETPAHGTTATVWLVIVSMGNPHAVQLVDDVERAPVPEIGPLIANHARFAQRVNAGFMQVV
CCCCCCCCEEEEEEEEECCCCCEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
DRGHVRLRVFERGAGETLACGSGACAAVSAGIRLGLLDSEVQVAMRGGLVSVAWSGAATD
HCCCEEEEEEECCCCCEEECCCCCHHHHHCCEEEEEECHHHHHHHCCCEEEEEECCCCCC
SVVMTGPATTVFEGQIELPSCP
CEEEECCCCEEEECEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA