| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611313
Identifier: 121611313
GI number: 121611313
Start: 4847239
End: 4849422
Strand: Direct
Name: 121611313
Synonym: Veis_4399
Alternate gene names: NA
Gene position: 4847239-4849422 (Clockwise)
Preceding gene: 121611312
Following gene: 121611320
Centisome position: 87.07
GC content: 69.69
Gene sequence:
>2184_bases GTGCAAGACAGCCACCCGGCCCCCGGCGCCACGGTCGATGGCCGGTTCCAGCACGCGCTGCAAAGCGCCGATTGGCCCTT GCTGGCGCGCCTGTGCCAGCGGGCGTTGCGCAAAAACCCGCGTGACCTGCCGGCCACGCGGCTGCTCGGCCATGCGCTGG AACGCCTGGGCAAGACTGCCGCGTGCGGGCAGGTCTACCGCCGCGGCGCGCTGCTGTGGCCCAACGATGCCGAGCTGCTG ATCAACTACGCCAGCATGTTGCTCAAGCATGCGCACACTGCGCAGGCGCTGCCGGTTCTGGAGCAGGTCTGCGCGCTGCG GCCTGACAAGGCGGTGTGCTGGCTCCAACTGTCGCAATGCTGCTATTTGCTGACGCTGCACGAAAGGGGTTTGCAAGCGG CCGAACGAGCCGCTGCGCTGGCCACGGAGCCGGGCGAAAAATCGGCCGCGCTGACCCAGAAAGCAATCCATGGCCGCGAG CTGGGGCAGGTCCGGCAGGCGGTGCAGGACTGTCTGCAAGCCATTGCGCTGACGCCCGGGGATCTGTCGAACCACACCAA CCGGCTGCTGTTCATGCTGGCCGACCCGCAGGCCGACGCCGCCAGCCTGGCGCAGGCCGCGCGCGACTATGCGGCGGTCG TCGAGCCGCCGCTGAAACCGCACTGGCCCGGCTTTGCCGAGCACCAAGGCGCGCCATGGCGCCGGCTGCGCGTCGGGTTT TTGTCGCCTGATTTCCGCACGCACTCGGTGATGTACTTCGTCGAGGGCTTGCTGGCGCAGTTGGACCGGCGCCAGTTCGA GGTCTTTGCCTTTTATCTGTTCCCGCGCGACGACCCGGTGACCGAACGGGTGCGGCGCCATGCCGATCGCTTCGTGCGCC TGGCGGGGCTGGGCGCCGAGCAGCAGGCGCAGGCGATTCGGGCGCAGCGCATCGACATCCTGATCGACCTGGCCGGGCAC ACCGGCTACAACGGCTTGCAGGCCATGGCCCACAAGGCGGCTCCGGTGCAGGTGTCGTGGCTCGGGTTTCCGGCGACGAC CGGGCTGCAGGCCGTGGATTACAAGCTCAGCGACGAGATCACCGACCCGCCCGAGGCCCAGGCGCATTACACCGAGCAGT TGTACCGCCTGCCGACGCTGTTTGCCTGCTACCGCCCGATGAGCCGACACCCCCTTTGGCGCTACCAGCCGCGCTACCAG GTGCAGCCCACGCCGGCGCTGGACAAGGGCCACATCACCTTTGGCTGCTGCAACAACCTGGGCAAGCTCGGCGACGAAGT GCTGGCGCTGTGGGGCCAGTTGCTGCAAGCGCTGCCGGACGCGCGCCTGCTGATCGAGGGCAAGAACCTCGATGGCCCGG ACTTCGCCGGCGCCTACCGCCAGCGCTGCCAGGGCCTGGGGCTGGACCCCGAGCGGCTGGAACTGGTGGCGCAGCAGGGC GACAACCAGTACCTGACCTACCACCGCATCGATATCGCGCTCGACCCCTTTCCGCTGGTCGGCGGCACGACCACGTTCGA CGCGCTGTGGATGGGCCTGCCCGTGGTCTCGATGGTCGGCCAGAGCTTCAAGAGCCGCATGGGCCTGGGCCTGCTGAGCT ATCTGGGGCGCACCGAATGGCTGGCCGCAACGCCCGCCGACTATCTGCGCATTGCCTGCGCGCTGGCCGCCGACAGGCAG GCGCTGAACCGCCTGCGCCTGGGATTGCGCGCCGAGGTCGAGCGCTCGGTGCTGATGCGCGAGGACCTCTTCAACCACCA TTTCGGCGAGGGCCTGCGCGCGATGTGGCTGCTGTGGCTGGCCCGGGCCAAGCACCCGGATGACGCCCAGGCCCAGGCGC AGGCCCTGGACGATTGGCTGCCCGGCTTGCCCGACGCCTGGCGCCAGCCCCCCGCGCCGGGGGTGGGGCTGGGGCCGGGC CAGCGCATCAGCCTGGCGCAGGCGCACCAGCGCTTGCAGGCGCTGGTGGCCAAAGCCCGGGCCAGCACGGCGGCCATGCC CGCAGGCGCCACCATCACCGGCCGCCACTGGAAGGCGCTGACCCTGCTGGCCGAAACCGTGCTGAACGCGGTGCCGAATG ACCCCGTGGCGCTGGCCTGCCTGGCCGAGGTGGAGCACGCCCATGGTCACAGCGAATTTGCCGTGACCTACCTGTGGCAT GCGACGCAGGCGATGGGATCGTGA
Upstream 100 bases:
>100_bases CAAGCTGTTGCAGTAGCCGTGCCCCGAGCCGTGCCCCGCACAGTACCCCGTACAACGCCCCGTACAACGCCCCGAACGGC GGCCCGGCCAAGGACGCAGC
Downstream 100 bases:
>100_bases ATCGCGGTATCGAGGGCCGCCCGGGATCGTCGGCACACAGGCCGGGCGCCCGCCCCTCGGGGATGGGGCGCGGTCATGCG CGTCAGCGAAGCCGTCACGG
Product: hypothetical protein
Products: NA
Alternate protein names: O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_2 Repeat Protein; TPR Domain-Containing Protein; SPINDLY Family O-Linked N-Acetylglucosamine Transferase; Tetratricopeptide TPR_1 Repeat-Containing Protein; Methyltransferase Type; TPR Domain Protein; FkbM Family Methyltransferase; SPY Protein; TPR Repeat Protein; Glycosyltransferase TPR Domain Protein; Glycosyl Transferase Family Protein; Tetratricopeptide Repeat-Containing Protein; Tetratricopeptide Repeat Domain Protein; Tpr Repeat-Containing Protein; Methyltransferase Regulatory Domain; Porphyrin Biosynthesis Protein; Tetratricopeptide Domain Protein; Transferase; TPR Repeat Domain-Containing Protein; Tetratricopeptide Repeat Family Protein; TPR Repeat-Containing Glycosyl Transferase; SEC-C Motif Domain Protein; Sulfotransferase; O-Linked GLCNAC Transferase; TPR Domain/SEC-C Motif Domain Protein; Glycosyl Transferase TPR Repeat Protein; TPR Repeat; O-Linked N-Acetylglucosamine TransferaNDLY Family; Glycosyl Transferase; Tetratricopeptide Repeat Protein; O-Linked Acetylglucosamine Transferase
Number of amino acids: Translated: 727; Mature: 727
Protein sequence:
>727_residues MQDSHPAPGATVDGRFQHALQSADWPLLARLCQRALRKNPRDLPATRLLGHALERLGKTAACGQVYRRGALLWPNDAELL INYASMLLKHAHTAQALPVLEQVCALRPDKAVCWLQLSQCCYLLTLHERGLQAAERAAALATEPGEKSAALTQKAIHGRE LGQVRQAVQDCLQAIALTPGDLSNHTNRLLFMLADPQADAASLAQAARDYAAVVEPPLKPHWPGFAEHQGAPWRRLRVGF LSPDFRTHSVMYFVEGLLAQLDRRQFEVFAFYLFPRDDPVTERVRRHADRFVRLAGLGAEQQAQAIRAQRIDILIDLAGH TGYNGLQAMAHKAAPVQVSWLGFPATTGLQAVDYKLSDEITDPPEAQAHYTEQLYRLPTLFACYRPMSRHPLWRYQPRYQ VQPTPALDKGHITFGCCNNLGKLGDEVLALWGQLLQALPDARLLIEGKNLDGPDFAGAYRQRCQGLGLDPERLELVAQQG DNQYLTYHRIDIALDPFPLVGGTTTFDALWMGLPVVSMVGQSFKSRMGLGLLSYLGRTEWLAATPADYLRIACALAADRQ ALNRLRLGLRAEVERSVLMREDLFNHHFGEGLRAMWLLWLARAKHPDDAQAQAQALDDWLPGLPDAWRQPPAPGVGLGPG QRISLAQAHQRLQALVAKARASTAAMPAGATITGRHWKALTLLAETVLNAVPNDPVALACLAEVEHAHGHSEFAVTYLWH ATQAMGS
Sequences:
>Translated_727_residues MQDSHPAPGATVDGRFQHALQSADWPLLARLCQRALRKNPRDLPATRLLGHALERLGKTAACGQVYRRGALLWPNDAELL INYASMLLKHAHTAQALPVLEQVCALRPDKAVCWLQLSQCCYLLTLHERGLQAAERAAALATEPGEKSAALTQKAIHGRE LGQVRQAVQDCLQAIALTPGDLSNHTNRLLFMLADPQADAASLAQAARDYAAVVEPPLKPHWPGFAEHQGAPWRRLRVGF LSPDFRTHSVMYFVEGLLAQLDRRQFEVFAFYLFPRDDPVTERVRRHADRFVRLAGLGAEQQAQAIRAQRIDILIDLAGH TGYNGLQAMAHKAAPVQVSWLGFPATTGLQAVDYKLSDEITDPPEAQAHYTEQLYRLPTLFACYRPMSRHPLWRYQPRYQ VQPTPALDKGHITFGCCNNLGKLGDEVLALWGQLLQALPDARLLIEGKNLDGPDFAGAYRQRCQGLGLDPERLELVAQQG DNQYLTYHRIDIALDPFPLVGGTTTFDALWMGLPVVSMVGQSFKSRMGLGLLSYLGRTEWLAATPADYLRIACALAADRQ ALNRLRLGLRAEVERSVLMREDLFNHHFGEGLRAMWLLWLARAKHPDDAQAQAQALDDWLPGLPDAWRQPPAPGVGLGPG QRISLAQAHQRLQALVAKARASTAAMPAGATITGRHWKALTLLAETVLNAVPNDPVALACLAEVEHAHGHSEFAVTYLWH ATQAMGS >Mature_727_residues MQDSHPAPGATVDGRFQHALQSADWPLLARLCQRALRKNPRDLPATRLLGHALERLGKTAACGQVYRRGALLWPNDAELL INYASMLLKHAHTAQALPVLEQVCALRPDKAVCWLQLSQCCYLLTLHERGLQAAERAAALATEPGEKSAALTQKAIHGRE LGQVRQAVQDCLQAIALTPGDLSNHTNRLLFMLADPQADAASLAQAARDYAAVVEPPLKPHWPGFAEHQGAPWRRLRVGF LSPDFRTHSVMYFVEGLLAQLDRRQFEVFAFYLFPRDDPVTERVRRHADRFVRLAGLGAEQQAQAIRAQRIDILIDLAGH TGYNGLQAMAHKAAPVQVSWLGFPATTGLQAVDYKLSDEITDPPEAQAHYTEQLYRLPTLFACYRPMSRHPLWRYQPRYQ VQPTPALDKGHITFGCCNNLGKLGDEVLALWGQLLQALPDARLLIEGKNLDGPDFAGAYRQRCQGLGLDPERLELVAQQG DNQYLTYHRIDIALDPFPLVGGTTTFDALWMGLPVVSMVGQSFKSRMGLGLLSYLGRTEWLAATPADYLRIACALAADRQ ALNRLRLGLRAEVERSVLMREDLFNHHFGEGLRAMWLLWLARAKHPDDAQAQAQALDDWLPGLPDAWRQPPAPGVGLGPG QRISLAQAHQRLQALVAKARASTAAMPAGATITGRHWKALTLLAETVLNAVPNDPVALACLAEVEHAHGHSEFAVTYLWH ATQAMGS
Specific function: Unknown
COG id: COG3914
COG function: function code O; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI32307150, Length=474, Percent_Identity=23.4177215189873, Blast_Score=92, Evalue=2e-18, Organism=Homo sapiens, GI32307148, Length=393, Percent_Identity=23.9185750636132, Blast_Score=91, Evalue=3e-18, Organism=Caenorhabditis elegans, GI115532690, Length=360, Percent_Identity=24.4444444444444, Blast_Score=94, Evalue=2e-19, Organism=Caenorhabditis elegans, GI115532692, Length=360, Percent_Identity=24.7222222222222, Blast_Score=94, Evalue=2e-19, Organism=Drosophila melanogaster, GI17647755, Length=352, Percent_Identity=24.7159090909091, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585827, Length=352, Percent_Identity=24.7159090909091, Blast_Score=101, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585829, Length=352, Percent_Identity=24.7159090909091, Blast_Score=101, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 80298; Mature: 80298
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQDSHPAPGATVDGRFQHALQSADWPLLARLCQRALRKNPRDLPATRLLGHALERLGKTA CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH ACGQVYRRGALLWPNDAELLINYASMLLKHAHTAQALPVLEQVCALRPDKAVCWLQLSQC HHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH CYLLTLHERGLQAAERAAALATEPGEKSAALTQKAIHGRELGQVRQAVQDCLQAIALTPG HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLSNHTNRLLFMLADPQADAASLAQAARDYAAVVEPPLKPHWPGFAEHQGAPWRRLRVGF CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEEC LSPDFRTHSVMYFVEGLLAQLDRRQFEVFAFYLFPRDDPVTERVRRHADRFVRLAGLGAE CCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCH QQAQAIRAQRIDILIDLAGHTGYNGLQAMAHKAAPVQVSWLGFPATTGLQAVDYKLSDEI HHHHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHCCEECCCCC TDPPEAQAHYTEQLYRLPTLFACYRPMSRHPLWRYQPRYQVQPTPALDKGHITFGCCNNL CCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHH GKLGDEVLALWGQLLQALPDARLLIEGKNLDGPDFAGAYRQRCQGLGLDPERLELVAQQG HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC DNQYLTYHRIDIALDPFPLVGGTTTFDALWMGLPVVSMVGQSFKSRMGLGLLSYLGRTEW CCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LAATPADYLRIACALAADRQALNRLRLGLRAEVERSVLMREDLFNHHFGEGLRAMWLLWL EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARAKHPDDAQAQAQALDDWLPGLPDAWRQPPAPGVGLGPGQRISLAQAHQRLQALVAKAR HHCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ASTAAMPAGATITGRHWKALTLLAETVLNAVPNDPVALACLAEVEHAHGHSEFAVTYLWH HHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHH ATQAMGS HHHHHCC >Mature Secondary Structure MQDSHPAPGATVDGRFQHALQSADWPLLARLCQRALRKNPRDLPATRLLGHALERLGKTA CCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCHH ACGQVYRRGALLWPNDAELLINYASMLLKHAHTAQALPVLEQVCALRPDKAVCWLQLSQC HHHHHHHCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH CYLLTLHERGLQAAERAAALATEPGEKSAALTQKAIHGRELGQVRQAVQDCLQAIALTPG HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC DLSNHTNRLLFMLADPQADAASLAQAARDYAAVVEPPLKPHWPGFAEHQGAPWRRLRVGF CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEEEC LSPDFRTHSVMYFVEGLLAQLDRRQFEVFAFYLFPRDDPVTERVRRHADRFVRLAGLGAE CCCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCH QQAQAIRAQRIDILIDLAGHTGYNGLQAMAHKAAPVQVSWLGFPATTGLQAVDYKLSDEI HHHHHHHHHHCEEEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCCCCHHCCEECCCCC TDPPEAQAHYTEQLYRLPTLFACYRPMSRHPLWRYQPRYQVQPTPALDKGHITFGCCNNL CCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHHH GKLGDEVLALWGQLLQALPDARLLIEGKNLDGPDFAGAYRQRCQGLGLDPERLELVAQQG HHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHCC DNQYLTYHRIDIALDPFPLVGGTTTFDALWMGLPVVSMVGQSFKSRMGLGLLSYLGRTEW CCCEEEEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE LAATPADYLRIACALAADRQALNRLRLGLRAEVERSVLMREDLFNHHFGEGLRAMWLLWL EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ARAKHPDDAQAQAQALDDWLPGLPDAWRQPPAPGVGLGPGQRISLAQAHQRLQALVAKAR HHCCCCCHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH ASTAAMPAGATITGRHWKALTLLAETVLNAVPNDPVALACLAEVEHAHGHSEFAVTYLWH HHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCEEHHHHHH ATQAMGS HHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA