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The map label for this gene is lsrB [H]

Identifier: 121611242

GI number: 121611242

Start: 4768403

End: 4769392

Strand: Direct

Name: lsrB [H]

Synonym: Veis_4328

Alternate gene names: 121611242

Gene position: 4768403-4769392 (Clockwise)

Preceding gene: 121611241

Following gene: 121611243

Centisome position: 85.66

GC content: 65.25

Gene sequence:

>990_bases
ATGATTCGTCAAACCGTATGTGCGCTCACCGCCGTGGCCTGCATCACCGGCGCCGCGTGGGCGCAGGACAAGCAGAGCAT
CGTGACCGTGGTCAAAGTCATCGGCGTGAACTGGTTCACCCGCATGGGTGAGGGCGTCAAGGAGTTCGGCGCCGCCAACG
CCAGCGTCGCCACCAGCATGGTCGGCCCGGCGCAAGGCGACCCGGCGCAGCAACTGCGCGTGATCGAAGACCTGGTGGCC
AAAAAGTCGAGCGCCATCGCCGTGGTGCCGATGGACCCGAGCACGATCGAAGGCGTGCTCAAGCGCGCGATGGAGCGTGG
CATCGTCGTCGTCACACACGAGGCCGACACCGCCAGGAACACGCAGGCCGATATCGAAGCCTTCGACAACACGGCCTTCG
GCGCGCGCCTGAACGACCGGCTCGCCAAGTGCATGGGCGAGAGCGGCAAGTGGACGACCTTCGTCGGCTCGCTCGGCAGC
CGCACGCACATGCAGTGGGCCAGCGGCGGCGCGGGCAACGCGGCCAAGTACCCGAAGATGGCGCTGGTGGACGCGCACAA
CGAGACCTTCGACAACGCCAACAAAGCCTACGAAAAGGCCAAGGAAATCCTGCGCAAGCACCCCGACATCGAGGGTTTCC
AGGGCAGTTCGGCGATCGACGCGATCGGCATCGGCCGCGCGGTGGAAGAAGCCGGGCTGCAACACAAGACCTGCGTGTTC
GGCGTCGGCCTGCCGCAAGACGCGGGCAAATACCTGGAGACCGGTGCCATCGACGGCATCAGTTTCTGGGACCCGAAAGA
CGCCGGCCTGGTGATGAACCAGGTGGCCAAGCTGCTGCTCGACGGCAAGCCGATCACCGACGGCATGAACCTGGGCACGC
GCGGCTACGACAAGGTCAGCGTCAAGAAAGGCCCGGGCAAGGGCGTGGTCATCACCGGCCAGGCCTGGGTGGACGTGGAC
AAGTCCAACTACAAGCAATACCCGTTCTGA

Upstream 100 bases:

>100_bases
GCACCCGCGCACCCGCGTTCCCCCGCTGCCGGGCAGTCCCCTCCTGCAGCGCGGTTCCGTTCCGAAGGGGTTTTTCGCAA
CCAGACCTGGAGACAACACC

Downstream 100 bases:

>100_bases
CCCGGCGATGACGCCAGTTCCTGCCCCGCCGGACGCGGCAGTGCCCTTTCTCGAAGTGCGCGGCGTGCACAAGCGCTTCG
CCGGCGTGCATGCGCTGCGC

Product: putative ABC transporter periplasmic sugar-binding protein

Products: NA

Alternate protein names: AI-2-binding protein lsrB [H]

Number of amino acids: Translated: 329; Mature: 329

Protein sequence:

>329_residues
MIRQTVCALTAVACITGAAWAQDKQSIVTVVKVIGVNWFTRMGEGVKEFGAANASVATSMVGPAQGDPAQQLRVIEDLVA
KKSSAIAVVPMDPSTIEGVLKRAMERGIVVVTHEADTARNTQADIEAFDNTAFGARLNDRLAKCMGESGKWTTFVGSLGS
RTHMQWASGGAGNAAKYPKMALVDAHNETFDNANKAYEKAKEILRKHPDIEGFQGSSAIDAIGIGRAVEEAGLQHKTCVF
GVGLPQDAGKYLETGAIDGISFWDPKDAGLVMNQVAKLLLDGKPITDGMNLGTRGYDKVSVKKGPGKGVVITGQAWVDVD
KSNYKQYPF

Sequences:

>Translated_329_residues
MIRQTVCALTAVACITGAAWAQDKQSIVTVVKVIGVNWFTRMGEGVKEFGAANASVATSMVGPAQGDPAQQLRVIEDLVA
KKSSAIAVVPMDPSTIEGVLKRAMERGIVVVTHEADTARNTQADIEAFDNTAFGARLNDRLAKCMGESGKWTTFVGSLGS
RTHMQWASGGAGNAAKYPKMALVDAHNETFDNANKAYEKAKEILRKHPDIEGFQGSSAIDAIGIGRAVEEAGLQHKTCVF
GVGLPQDAGKYLETGAIDGISFWDPKDAGLVMNQVAKLLLDGKPITDGMNLGTRGYDKVSVKKGPGKGVVITGQAWVDVD
KSNYKQYPF
>Mature_329_residues
MIRQTVCALTAVACITGAAWAQDKQSIVTVVKVIGVNWFTRMGEGVKEFGAANASVATSMVGPAQGDPAQQLRVIEDLVA
KKSSAIAVVPMDPSTIEGVLKRAMERGIVVVTHEADTARNTQADIEAFDNTAFGARLNDRLAKCMGESGKWTTFVGSLGS
RTHMQWASGGAGNAAKYPKMALVDAHNETFDNANKAYEKAKEILRKHPDIEGFQGSSAIDAIGIGRAVEEAGLQHKTCVF
GVGLPQDAGKYLETGAIDGISFWDPKDAGLVMNQVAKLLLDGKPITDGMNLGTRGYDKVSVKKGPGKGVVITGQAWVDVD
KSNYKQYPF

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Binds AI-2 and delivers it to the lsrC and lsrD permeases [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1787795, Length=338, Percent_Identity=24.2603550295858, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790526, Length=249, Percent_Identity=25.7028112449799, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34990; Mature: 34990

Theoretical pI: Translated: 7.96; Mature: 7.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRQTVCALTAVACITGAAWAQDKQSIVTVVKVIGVNWFTRMGEGVKEFGAANASVATSM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VGPAQGDPAQQLRVIEDLVAKKSSAIAVVPMDPSTIEGVLKRAMERGIVVVTHEADTARN
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCC
TQADIEAFDNTAFGARLNDRLAKCMGESGKWTTFVGSLGSRTHMQWASGGAGNAAKYPKM
CHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCE
ALVDAHNETFDNANKAYEKAKEILRKHPDIEGFQGSSAIDAIGIGRAVEEAGLQHKTCVF
EEEECCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
GVGLPQDAGKYLETGAIDGISFWDPKDAGLVMNQVAKLLLDGKPITDGMNLGTRGYDKVS
ECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
VKKGPGKGVVITGQAWVDVDKSNYKQYPF
EECCCCCCEEEECCEEEECCCCCCCCCCC
>Mature Secondary Structure
MIRQTVCALTAVACITGAAWAQDKQSIVTVVKVIGVNWFTRMGEGVKEFGAANASVATSM
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
VGPAQGDPAQQLRVIEDLVAKKSSAIAVVPMDPSTIEGVLKRAMERGIVVVTHEADTARN
CCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCC
TQADIEAFDNTAFGARLNDRLAKCMGESGKWTTFVGSLGSRTHMQWASGGAGNAAKYPKM
CHHHHHHHCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEECCCCCCCCCCCCCE
ALVDAHNETFDNANKAYEKAKEILRKHPDIEGFQGSSAIDAIGIGRAVEEAGLQHKTCVF
EEEECCCCHHCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEE
GVGLPQDAGKYLETGAIDGISFWDPKDAGLVMNQVAKLLLDGKPITDGMNLGTRGYDKVS
ECCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEE
VKKGPGKGVVITGQAWVDVDKSNYKQYPF
EECCCCCCEEEECCEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA