| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121611057
Identifier: 121611057
GI number: 121611057
Start: 4541239
End: 4543698
Strand: Direct
Name: 121611057
Synonym: Veis_4141
Alternate gene names: NA
Gene position: 4541239-4543698 (Clockwise)
Preceding gene: 121611056
Following gene: 121611058
Centisome position: 81.58
GC content: 66.3
Gene sequence:
>2460_bases ATGAGCATCGCTGACACCCTCGTCCACCGTGGCCCTGGCCACGACGGGCAAACGCAACCCGACAAAGCCCTTGCATCCAC CCATTCCGTTGCAAACACCATGGCCACCACCATCACCTTCGACAAGCAAGTCATCAAAAACGGCGAGACCGCCCAGGTCA CGTTTACTTTCACCGATCCCAACCACACGCTCTCCCCCGGAAGCCTGACCACCACGGGCGGACTCATACACAGCATCGTC AATCGTGGCGTCATCAACGGTCAGCGTGTCTATACCGCCACATTCTTGCCCACCGGGAACCTGGAGAGTTCCTTCCACCG CATCCGCTACGGTGTTGCCGGCGAGGCCGATTACGCAAACAGCGGCAACATCCACATTGACACCCGACCGCCCGTTGTTC TCGGTGTCTCGTTCGACAAAAGCGACCTGCGCCCCGGGGAAAAAGCCACCATCACCCTCACCTTCAGCGAGCCGGTGCGG AGCGACAGCTTCGGACTCGAAGACCTGCGAGTGGGCGCCGGCAAGGGCACTTTGAGCAACCTGCGCGTCTCCCCCGAAGA CACCACGGCCACCACCGCCGCCGCCACCACCTGGCAGGTCGACCTGGATGCCCCGACCAGCCCGTCCACGACGAGCAGCG ATGGCAACCAGATACAGATAAACCACACCGGCATCACCGATCGCGTGGGCAACCCAGGCTCGGAGAGTGTGGAGAGGAAC GGGGATACCACCCTTTGGACGAGCATCCTGGCGCCCACCTACAACATCGTTGCGCCGCCCAAGGTCGCCATCACGCTGTC GGACACCAGCCTGCTGGCCGGCGAGACGATGACCGTCACCTTCACCTTCAGCGAGAAGGTCACCGGCTTTGGTACCGAGG ACATCCAGTACGACACCAGCAAAGGCACGCTGAGCGCCCTGACGGCGGTCGGCACCGACAGCAAGGTCTGGACCGCCACC TACACGCCCCGGTCCGGCACCGAGAGCGCCGACAACACCATCCGCGTGGACCTCGCCAGCGTCCGGGGCGCGCGGGACAA CGCCGGCGTGGGCACCAGCACCAGCGGCAACTTCAGCATCGACACCGTGCGCCCCACGGTCGGCGTGACGATCAGCGACG AGCGCCTCACCGCTGGCGAAAGCGCCACCTTCACCTTCACCTTCAGCGAGAGCGTCACCGGCTTCACGAAAGAGGACATC GGCCTGTCCCGGGCCAACGGCACGCTCGGCGACCTGACGCCGGTCGGCACCGACGGCAAAACCTGGACCGCCACCTTCAC ACCCACGGCCAGACTGGAGCGCCCCTACCCCTCCACCAACAGCCAGCTCACCCTGAACCTGGCCAATGTCAGGGATGCCG CAGGCAACACCGTCGCCAACAACACCTACTCGCTCCGGTACACCGTAGACACCATGGTTTTTGCGCTCAGCAGCGCCACG GTGAACCGCGACCAGTTGGTGCTGGGCTACGGCGCCGAAACGGATCTCGACGGGAACGCGGACCGCGCCCCGACCAACGA GTCCTTTACCGTGCTGGTCGATGGCACGCGCATCGACGTCAGCCGGGTGACGGTGGATGCAGCGGCCCGGACGGTCACGC TGACCCTGGCCCGCGCCGTGGCTGCCGGCCAGCAGGTGAGCATCGCCTACCAGGACACCGACACCAGCGACGGCAAAGCG CTACAGGAGGTCAACGACGGCGACGACGCGGCCAGCTTCGCGGCCACGCCGGTGACCAACCTCACCCCGTCCCCGGTCGC ACCCGCCACACCGGAGGCGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGAGGGTCTGGGT CGTCTGGATCGTCTGGGGCGCTGGACTCCGACTACGACAGTGTGCCCGACGCCCAGGAGGACCAGGCCCCCGGCCTGCTG CGCCCCGATGGCTCGGCCGGCACGGATGGCGACGGCAACGGCGACGATATCCAGGACAGCCAGCAGGTCGCCGTCGGCTC GACCCGCGACCTGACCCTGGTGGCCGGCAGCCAGGACGGCAAACTGATCCCCGGCAGCAATGCGCGCATCACCGAACTGG TGCGCAACGATGCCCCCGCCAGCCTGCCCAAGGGCATGGAAATGCCGCTCGGCCTGACGCAATTCAGGGTCGGCCTGTCC GAAGGACGCTACACCGAGAGCTTCAGCCTGTATGTGGACCCGGCCACCGGCGTCAACGGCTACTGGGTCAAGGACAGCAC CGGCACCTGGGTGAACCTGGCCAGCGAACCCTACGGCGGCAAGGTGAGCAGCGAAGGCGGGCGCACGCGGCTGAACTTCC AGATCCAGGACGGCGGCCAGTACGACGCCGACGGACTGGCCGATGGCCACATCACCGCCCTTGGCGCCGCAGCGAAGATG CCGCTGTCCATCGTCGGGCAGGCGCCGCCCCAGGTCGAGTCGCATGGGTTTTGGTTCTAG
Upstream 100 bases:
>100_bases AATGCCATAACGCTGCACTATGGAATTCCATTAGCCTATGCAATGGCGCGGTATAATTTGTTTCAGCATGTCATTGTCGT AAGTATTTGTGCCACGTCGG
Downstream 100 bases:
>100_bases TGTCGCGTCACGGATCAGATGTCGTAGGCTGCGCGCAGCCATCGGAGCGCAGCGCAAGGCGCATCGCGCAGCCCATACCG AGCTGTATTGGCAAGCGATG
Product: hypothetical protein
Products: NA
Alternate protein names: Pyrrolo-Quinoline Quinone; Glycosyl Hydrolase BNR Repeat; Flagellar Hook-Length Control Protein FliK; S-Layer Domain Protein; BNR Repeat-Containing Glycosyl Hydrolase; RTX xin; Cadherin Domain-Containing Protein; Cadherin Domain Protein; Outer Membrane Adhesin Like Proteiin; Outer Membrane Adhesin Like Protein; Fibronectin Type III Domain Protein
Number of amino acids: Translated: 819; Mature: 818
Protein sequence:
>819_residues MSIADTLVHRGPGHDGQTQPDKALASTHSVANTMATTITFDKQVIKNGETAQVTFTFTDPNHTLSPGSLTTTGGLIHSIV NRGVINGQRVYTATFLPTGNLESSFHRIRYGVAGEADYANSGNIHIDTRPPVVLGVSFDKSDLRPGEKATITLTFSEPVR SDSFGLEDLRVGAGKGTLSNLRVSPEDTTATTAAATTWQVDLDAPTSPSTTSSDGNQIQINHTGITDRVGNPGSESVERN GDTTLWTSILAPTYNIVAPPKVAITLSDTSLLAGETMTVTFTFSEKVTGFGTEDIQYDTSKGTLSALTAVGTDSKVWTAT YTPRSGTESADNTIRVDLASVRGARDNAGVGTSTSGNFSIDTVRPTVGVTISDERLTAGESATFTFTFSESVTGFTKEDI GLSRANGTLGDLTPVGTDGKTWTATFTPTARLERPYPSTNSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSAT VNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRIDVSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKA LQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGGSGGSGGSGGSGGSGGSGSSGSSGALDSDYDSVPDAQEDQAPGLL RPDGSAGTDGDGNGDDIQDSQQVAVGSTRDLTLVAGSQDGKLIPGSNARITELVRNDAPASLPKGMEMPLGLTQFRVGLS EGRYTESFSLYVDPATGVNGYWVKDSTGTWVNLASEPYGGKVSSEGGRTRLNFQIQDGGQYDADGLADGHITALGAAAKM PLSIVGQAPPQVESHGFWF
Sequences:
>Translated_819_residues MSIADTLVHRGPGHDGQTQPDKALASTHSVANTMATTITFDKQVIKNGETAQVTFTFTDPNHTLSPGSLTTTGGLIHSIV NRGVINGQRVYTATFLPTGNLESSFHRIRYGVAGEADYANSGNIHIDTRPPVVLGVSFDKSDLRPGEKATITLTFSEPVR SDSFGLEDLRVGAGKGTLSNLRVSPEDTTATTAAATTWQVDLDAPTSPSTTSSDGNQIQINHTGITDRVGNPGSESVERN GDTTLWTSILAPTYNIVAPPKVAITLSDTSLLAGETMTVTFTFSEKVTGFGTEDIQYDTSKGTLSALTAVGTDSKVWTAT YTPRSGTESADNTIRVDLASVRGARDNAGVGTSTSGNFSIDTVRPTVGVTISDERLTAGESATFTFTFSESVTGFTKEDI GLSRANGTLGDLTPVGTDGKTWTATFTPTARLERPYPSTNSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSAT VNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRIDVSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKA LQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGGSGGSGGSGGSGGSGGSGSSGSSGALDSDYDSVPDAQEDQAPGLL RPDGSAGTDGDGNGDDIQDSQQVAVGSTRDLTLVAGSQDGKLIPGSNARITELVRNDAPASLPKGMEMPLGLTQFRVGLS EGRYTESFSLYVDPATGVNGYWVKDSTGTWVNLASEPYGGKVSSEGGRTRLNFQIQDGGQYDADGLADGHITALGAAAKM PLSIVGQAPPQVESHGFWF >Mature_818_residues SIADTLVHRGPGHDGQTQPDKALASTHSVANTMATTITFDKQVIKNGETAQVTFTFTDPNHTLSPGSLTTTGGLIHSIVN RGVINGQRVYTATFLPTGNLESSFHRIRYGVAGEADYANSGNIHIDTRPPVVLGVSFDKSDLRPGEKATITLTFSEPVRS DSFGLEDLRVGAGKGTLSNLRVSPEDTTATTAAATTWQVDLDAPTSPSTTSSDGNQIQINHTGITDRVGNPGSESVERNG DTTLWTSILAPTYNIVAPPKVAITLSDTSLLAGETMTVTFTFSEKVTGFGTEDIQYDTSKGTLSALTAVGTDSKVWTATY TPRSGTESADNTIRVDLASVRGARDNAGVGTSTSGNFSIDTVRPTVGVTISDERLTAGESATFTFTFSESVTGFTKEDIG LSRANGTLGDLTPVGTDGKTWTATFTPTARLERPYPSTNSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSATV NRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRIDVSRVTVDAAARTVTLTLARAVAAGQQVSIAYQDTDTSDGKAL QEVNDGDDAASFAATPVTNLTPSPVAPATPEASGGSGGSGGSGGSGGSGGSGSSGSSGALDSDYDSVPDAQEDQAPGLLR PDGSAGTDGDGNGDDIQDSQQVAVGSTRDLTLVAGSQDGKLIPGSNARITELVRNDAPASLPKGMEMPLGLTQFRVGLSE GRYTESFSLYVDPATGVNGYWVKDSTGTWVNLASEPYGGKVSSEGGRTRLNFQIQDGGQYDADGLADGHITALGAAAKMP LSIVGQAPPQVESHGFWF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 84924; Mature: 84793
Theoretical pI: Translated: 4.32; Mature: 4.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 0.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIADTLVHRGPGHDGQTQPDKALASTHSVANTMATTITFDKQVIKNGETAQVTFTFTDP CCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECHHHHCCCCEEEEEEEEECC NHTLSPGSLTTTGGLIHSIVNRGVINGQRVYTATFLPTGNLESSFHRIRYGVAGEADYAN CCEECCCCEECHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHEEECCCCCCCCCC SGNIHIDTRPPVVLGVSFDKSDLRPGEKATITLTFSEPVRSDSFGLEDLRVGAGKGTLSN CCCEEEECCCCEEEEEECCHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCHHC LRVSPEDTTATTAAATTWQVDLDAPTSPSTTSSDGNQIQINHTGITDRVGNPGSESVERN CEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCC GDTTLWTSILAPTYNIVAPPKVAITLSDTSLLAGETMTVTFTFSEKVTGFGTEDIQYDTS CCCEEEEHHHCCCCEEECCCEEEEEECCCEEECCCEEEEEEEECCCCCCCCCCCEEEECC KGTLSALTAVGTDSKVWTATYTPRSGTESADNTIRVDLASVRGARDNAGVGTSTSGNFSI CCCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCCEEE DTVRPTVGVTISDERLTAGESATFTFTFSESVTGFTKEDIGLSRANGTLGDLTPVGTDGK EEECCEEEEEECCCEEECCCCEEEEEEECCCCCCCCHHCCCEECCCCCCCCCCCCCCCCC TWTATFTPTARLERPYPSTNSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSAT EEEEEECCHHHCCCCCCCCCCEEEEEEECCCCCCCCEECCCEEEEEEEHHHEEEEHHCCC VNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRIDVSRVTVDAAARTVTLTLARAV CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEHHHEEEEEEEHHHH AAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGGSGGS HCCCEEEEEEECCCCCCCHHHHHCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCC GGSGGSGGSGGSGSSGSSGALDSDYDSVPDAQEDQAPGLLRPDGSAGTDGDGNGDDIQDS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QQVAVGSTRDLTLVAGSQDGKLIPGSNARITELVRNDAPASLPKGMEMPLGLTQFRVGLS CEEEECCCCEEEEEECCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHEEECC EGRYTESFSLYVDPATGVNGYWVKDSTGTWVNLASEPYGGKVSSEGGRTRLNFQIQDGGQ CCCEEEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCCCEECCCCCCEEEEEEECCCCC YDADGLADGHITALGAAAKMPLSIVGQAPPQVESHGFWF CCCCCCCCCCEEEECHHHCCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure SIADTLVHRGPGHDGQTQPDKALASTHSVANTMATTITFDKQVIKNGETAQVTFTFTDP CHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHEEEEEEECHHHHCCCCEEEEEEEEECC NHTLSPGSLTTTGGLIHSIVNRGVINGQRVYTATFLPTGNLESSFHRIRYGVAGEADYAN CCEECCCCEECHHHHHHHHHHCCCCCCCEEEEEEEEECCCCHHHHHHEEECCCCCCCCCC SGNIHIDTRPPVVLGVSFDKSDLRPGEKATITLTFSEPVRSDSFGLEDLRVGAGKGTLSN CCCEEEECCCCEEEEEECCHHHCCCCCEEEEEEEECCCCCCCCCCCCCEEEECCCCCHHC LRVSPEDTTATTAAATTWQVDLDAPTSPSTTSSDGNQIQINHTGITDRVGNPGSESVERN CEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHCC GDTTLWTSILAPTYNIVAPPKVAITLSDTSLLAGETMTVTFTFSEKVTGFGTEDIQYDTS CCCEEEEHHHCCCCEEECCCEEEEEECCCEEECCCEEEEEEEECCCCCCCCCCCEEEECC KGTLSALTAVGTDSKVWTATYTPRSGTESADNTIRVDLASVRGARDNAGVGTSTSGNFSI CCCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEHHCCCCCCCCCCCCCCCCCEEE DTVRPTVGVTISDERLTAGESATFTFTFSESVTGFTKEDIGLSRANGTLGDLTPVGTDGK EEECCEEEEEECCCEEECCCCEEEEEEECCCCCCCCHHCCCEECCCCCCCCCCCCCCCCC TWTATFTPTARLERPYPSTNSQLTLNLANVRDAAGNTVANNTYSLRYTVDTMVFALSSAT EEEEEECCHHHCCCCCCCCCCEEEEEEECCCCCCCCEECCCEEEEEEEHHHEEEEHHCCC VNRDQLVLGYGAETDLDGNADRAPTNESFTVLVDGTRIDVSRVTVDAAARTVTLTLARAV CCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEEEEEHHHEEEEEEEHHHH AAGQQVSIAYQDTDTSDGKALQEVNDGDDAASFAATPVTNLTPSPVAPATPEASGGSGGS HCCCEEEEEEECCCCCCCHHHHHCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCCCCCCC GGSGGSGGSGGSGSSGSSGALDSDYDSVPDAQEDQAPGLLRPDGSAGTDGDGNGDDIQDS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC QQVAVGSTRDLTLVAGSQDGKLIPGSNARITELVRNDAPASLPKGMEMPLGLTQFRVGLS CEEEECCCCEEEEEECCCCCCEECCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHEEECC EGRYTESFSLYVDPATGVNGYWVKDSTGTWVNLASEPYGGKVSSEGGRTRLNFQIQDGGQ CCCEEEEEEEEECCCCCCCCEEEECCCCCEEEECCCCCCCEECCCCCCEEEEEEECCCCC YDADGLADGHITALGAAAKMPLSIVGQAPPQVESHGFWF CCCCCCCCCCEEEECHHHCCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA