| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610966
Identifier: 121610966
GI number: 121610966
Start: 4441076
End: 4442047
Strand: Direct
Name: 121610966
Synonym: Veis_4050
Alternate gene names: NA
Gene position: 4441076-4442047 (Clockwise)
Preceding gene: 121610965
Following gene: 121610967
Centisome position: 79.78
GC content: 63.07
Gene sequence:
>972_bases ATGAGCAACCTGCACCAGAACGCATTGGTCTTCGACGGCCTGATCATTTCCAACTGGGACCGCTCGGTCTTCGAGGACAT GCGCAAAGGCGGCCTGAGCGGCGCCAATTGCACGGTCTCGGTGTGGGAGGACTTCAAGGGCACGGTGGCCAACATCGCCC GCATGAAGCGGCTGATCCGCGACAACGGCGATTTGCTGGCCCTGGCGCGCAACACGGCCGACATCGAGCAGGCCAAGCAG GACGGCAAGACCGCCATCGTGCTCGGATTCCAGAACGCCCATGCGTTCGAGGACCAGCTCGGCTACATCGAAGCCTTCCA CGACATGGGCGTGCGCGTGGTGCAGCTTTGCTACAACACGCAGAACCTGATCGGCACCGGCTGCTACGAACGCGATGGCG GCCTGTCGGGCTACGGCCACGAGGTGGTGGCCGAGATGAACCGCGTCGGCATCATGATCGACCTGTCGCATGTCGGCGCC AAGACCTCCGACGAGGCGATCCGCGCCTCCAAAAAGCCGGTCACCTACTCGCATTGCCTGCCGGCGGGTCTGAAGAAACA CCCGCGCAACAAGAGCGATACGCAGCTCAAATTCATCGCCGACCAGGGCGGTTTCATCGGGGTGACCATGTTCCCGCCCT TTCTCAAGCGCGGCATCGATGCCACGGTCGAGGACTATGTGCAGGCGCTGGACTATGTAGTCAACCTGGTCGGCGAGGAC TGCGTGGGCATAGGCACCGACTTCACCCAGGGCTACGGCCAGGCGTTCTTCGATTGGCTCACGCATGACAAGGGCGTGCA CCGCCGCCTGACCGAGTTCGGCGTGGTCCAGAACCCGCAGGGCATACGCACCATCGGCGAGATGCCCAACCTGACCGCAG CGATGGAACGGGCGCGCTGGCCGGCACGCAAGATCACCAAGGTGATGGGGCGCAACTGGCTGCGGGTTTTCAACGAAGTC TGGAGTGTGTGA
Upstream 100 bases:
>100_bases CCCGGCGCAGTGCGCCGATCCGGTGTTTGCGCCGTTGCTGGAAAGCGCCTGACCCGACCCCCCTGCCCCGCATTCCTGCC CACGCCTGAAAGAACACACC
Downstream 100 bases:
>100_bases TGACCATGAAATCGAACCTCGTCGCGCGGCAACGCCGCCAGTTCCTGACGAAAACCCTGGGCGGGCTATCGGCGCTGTCC ACGCTGGCGGCGCTTTCCGG
Product: membrane dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 323; Mature: 322
Protein sequence:
>323_residues MSNLHQNALVFDGLIISNWDRSVFEDMRKGGLSGANCTVSVWEDFKGTVANIARMKRLIRDNGDLLALARNTADIEQAKQ DGKTAIVLGFQNAHAFEDQLGYIEAFHDMGVRVVQLCYNTQNLIGTGCYERDGGLSGYGHEVVAEMNRVGIMIDLSHVGA KTSDEAIRASKKPVTYSHCLPAGLKKHPRNKSDTQLKFIADQGGFIGVTMFPPFLKRGIDATVEDYVQALDYVVNLVGED CVGIGTDFTQGYGQAFFDWLTHDKGVHRRLTEFGVVQNPQGIRTIGEMPNLTAAMERARWPARKITKVMGRNWLRVFNEV WSV
Sequences:
>Translated_323_residues MSNLHQNALVFDGLIISNWDRSVFEDMRKGGLSGANCTVSVWEDFKGTVANIARMKRLIRDNGDLLALARNTADIEQAKQ DGKTAIVLGFQNAHAFEDQLGYIEAFHDMGVRVVQLCYNTQNLIGTGCYERDGGLSGYGHEVVAEMNRVGIMIDLSHVGA KTSDEAIRASKKPVTYSHCLPAGLKKHPRNKSDTQLKFIADQGGFIGVTMFPPFLKRGIDATVEDYVQALDYVVNLVGED CVGIGTDFTQGYGQAFFDWLTHDKGVHRRLTEFGVVQNPQGIRTIGEMPNLTAAMERARWPARKITKVMGRNWLRVFNEV WSV >Mature_322_residues SNLHQNALVFDGLIISNWDRSVFEDMRKGGLSGANCTVSVWEDFKGTVANIARMKRLIRDNGDLLALARNTADIEQAKQD GKTAIVLGFQNAHAFEDQLGYIEAFHDMGVRVVQLCYNTQNLIGTGCYERDGGLSGYGHEVVAEMNRVGIMIDLSHVGAK TSDEAIRASKKPVTYSHCLPAGLKKHPRNKSDTQLKFIADQGGFIGVTMFPPFLKRGIDATVEDYVQALDYVVNLVGEDC VGIGTDFTQGYGQAFFDWLTHDKGVHRRLTEFGVVQNPQGIRTIGEMPNLTAAMERARWPARKITKVMGRNWLRVFNEVW SV
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=282, Percent_Identity=25.531914893617, Blast_Score=116, Evalue=3e-26, Organism=Homo sapiens, GI4758190, Length=282, Percent_Identity=25.531914893617, Blast_Score=116, Evalue=3e-26, Organism=Homo sapiens, GI11641269, Length=314, Percent_Identity=24.5222929936306, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI193211608, Length=248, Percent_Identity=24.1935483870968, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI193211610, Length=248, Percent_Identity=24.1935483870968, Blast_Score=87, Evalue=2e-17, Organism=Drosophila melanogaster, GI281362638, Length=321, Percent_Identity=29.9065420560748, Blast_Score=145, Evalue=4e-35, Organism=Drosophila melanogaster, GI281362636, Length=321, Percent_Identity=29.9065420560748, Blast_Score=145, Evalue=4e-35, Organism=Drosophila melanogaster, GI221475880, Length=317, Percent_Identity=25.8675078864353, Blast_Score=117, Evalue=8e-27, Organism=Drosophila melanogaster, GI161083233, Length=318, Percent_Identity=25.4716981132075, Blast_Score=113, Evalue=2e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 35917; Mature: 35786
Theoretical pI: Translated: 7.27; Mature: 7.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNLHQNALVFDGLIISNWDRSVFEDMRKGGLSGANCTVSVWEDFKGTVANIARMKRLIR CCCCCCCHHHCCCEEEECCCHHHHHHHHHCCCCCCCEEEEECHHHCHHHHHHHHHHHHHH DNGDLLALARNTADIEQAKQDGKTAIVLGFQNAHAFEDQLGYIEAFHDMGVRVVQLCYNT CCCCEEEEECCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC QNLIGTGCYERDGGLSGYGHEVVAEMNRVGIMIDLSHVGAKTSDEAIRASKKPVTYSHCL HHHHCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEHHHCCCCCCHHHHHHCCCCCCHHHHC PAGLKKHPRNKSDTQLKFIADQGGFIGVTMFPPFLKRGIDATVEDYVQALDYVVNLVGED CHHHHHCCCCCCCCEEEEEECCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCC CVGIGTDFTQGYGQAFFDWLTHDKGVHRRLTEFGVVQNPQGIRTIGEMPNLTAAMERARW HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCC PARKITKVMGRNWLRVFNEVWSV CHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SNLHQNALVFDGLIISNWDRSVFEDMRKGGLSGANCTVSVWEDFKGTVANIARMKRLIR CCCCCCHHHCCCEEEECCCHHHHHHHHHCCCCCCCEEEEECHHHCHHHHHHHHHHHHHH DNGDLLALARNTADIEQAKQDGKTAIVLGFQNAHAFEDQLGYIEAFHDMGVRVVQLCYNT CCCCEEEEECCCHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCC QNLIGTGCYERDGGLSGYGHEVVAEMNRVGIMIDLSHVGAKTSDEAIRASKKPVTYSHCL HHHHCCCCCCCCCCCCCCCHHHHHHHHHCEEEEEHHHCCCCCCHHHHHHCCCCCCHHHHC PAGLKKHPRNKSDTQLKFIADQGGFIGVTMFPPFLKRGIDATVEDYVQALDYVVNLVGED CHHHHHCCCCCCCCEEEEEECCCCEEEEEECCHHHHCCCCCCHHHHHHHHHHHHHHHCCC CVGIGTDFTQGYGQAFFDWLTHDKGVHRRLTEFGVVQNPQGIRTIGEMPNLTAAMERARW HHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCHHHHHHCCCCHHHHHHHHCC PARKITKVMGRNWLRVFNEVWSV CHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]