| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is 121610664
Identifier: 121610664
GI number: 121610664
Start: 4133665
End: 4134444
Strand: Direct
Name: 121610664
Synonym: Veis_3740
Alternate gene names: NA
Gene position: 4133665-4134444 (Clockwise)
Preceding gene: 121610663
Following gene: 121610665
Centisome position: 74.26
GC content: 60.0
Gene sequence:
>780_bases ATGCCGGAACCGTTGAAGAGCAAAGACAAACACGGGGCGCCGTTCACACGGCCGCCCGAGATCGAGGCATCCTTGGGAAG GCTGGAGGCGGTCGATGCTGCGGCACGCCTGCAGGCCTTCGCTGTCGCGTCGAGGAAGAGCAGCGGCTATGTGCCGTCGG AAGCGCTGACGTATTTCCTGCGGCGTGCCTGGGCTGCCGATGCCCGGGACGAGTTCAAGCAGATCTTCGAACTGCTCATG AAGCGCGTGGAGCAGTCCCTGTATTCAACGGTCGCCGACTCCCGCATGACTGGGGCGCAAGGCATACGCGAAGAGATCAT GGGCCGCTTCGCCGAGCGAATCGCCAAGGACTGTCAAGGCCGCTTCGCCATGCTGGACTTCTTTGAGGTGCGGTTCGACC TGGCATTCGCCCGATTCCGCAAAACCGTGCTGAGGCAGATTGGTCCGGCCTCGGTTCTTACCGTGCCGCTGTCCACGGAT GGCGATGAGGGTCAGGACATTTCTCCGGAGGTCGAGGCAGCAGCGGCCGACTTCCTCGGAGGTGACCCTCAAAAAATTGA CGATCCGGCTTTCCGGTTGGAGTTGGATGCTGCGATTGATGCGTTACCAGATGATCAAAGACGGGTCGTGGGCTTGCTGC GGCAAGGTTTCCAGATCGACTCAAAGGACTCGAACATCATGACTATCGCCAAGATGCTGAAGTGCGATGAAAGAACCGTA CGGAATCGCCGCGACCGTGCATACAAGACCCTCAGGTCTGCTCTGCAGGAGGACGCATGA
Upstream 100 bases:
>100_bases CGTGCCGATCCAGCCGCAGGTGTCCTTGCCGATCCGCATCCGGTGACGGTGGAAGGGCAAACGTATGTACAGAACGGACT GACGGGAAAGGAGGAGATCG
Downstream 100 bases:
>100_bases GCACTTCAAAGCCGTTCGCCGCGGACGAGGAATCCGTGCTGATGGCGTTCTCAATGGAGCCCAGCCATGGCCGGGAAACG CTTGTGCGTTACATCAAAGA
Product: ECF subfamily RNA polymerase sigma-24 factor
Products: NA
Alternate protein names: Response Regulator Receiver Protein; RNA Polymerase Sigma-24 Subunit ECF Subfamily; Chromosome Segregation ATPase
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MPEPLKSKDKHGAPFTRPPEIEASLGRLEAVDAAARLQAFAVASRKSSGYVPSEALTYFLRRAWAADARDEFKQIFELLM KRVEQSLYSTVADSRMTGAQGIREEIMGRFAERIAKDCQGRFAMLDFFEVRFDLAFARFRKTVLRQIGPASVLTVPLSTD GDEGQDISPEVEAAAADFLGGDPQKIDDPAFRLELDAAIDALPDDQRRVVGLLRQGFQIDSKDSNIMTIAKMLKCDERTV RNRRDRAYKTLRSALQEDA
Sequences:
>Translated_259_residues MPEPLKSKDKHGAPFTRPPEIEASLGRLEAVDAAARLQAFAVASRKSSGYVPSEALTYFLRRAWAADARDEFKQIFELLM KRVEQSLYSTVADSRMTGAQGIREEIMGRFAERIAKDCQGRFAMLDFFEVRFDLAFARFRKTVLRQIGPASVLTVPLSTD GDEGQDISPEVEAAAADFLGGDPQKIDDPAFRLELDAAIDALPDDQRRVVGLLRQGFQIDSKDSNIMTIAKMLKCDERTV RNRRDRAYKTLRSALQEDA >Mature_258_residues PEPLKSKDKHGAPFTRPPEIEASLGRLEAVDAAARLQAFAVASRKSSGYVPSEALTYFLRRAWAADARDEFKQIFELLMK RVEQSLYSTVADSRMTGAQGIREEIMGRFAERIAKDCQGRFAMLDFFEVRFDLAFARFRKTVLRQIGPASVLTVPLSTDG DEGQDISPEVEAAAADFLGGDPQKIDDPAFRLELDAAIDALPDDQRRVVGLLRQGFQIDSKDSNIMTIAKMLKCDERTVR NRRDRAYKTLRSALQEDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 29009; Mature: 28878
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEPLKSKDKHGAPFTRPPEIEASLGRLEAVDAAARLQAFAVASRKSSGYVPSEALTYFL CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH RRAWAADARDEFKQIFELLMKRVEQSLYSTVADSRMTGAQGIREEIMGRFAERIAKDCQG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RFAMLDFFEVRFDLAFARFRKTVLRQIGPASVLTVPLSTDGDEGQDISPEVEAAAADFLG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC GDPQKIDDPAFRLELDAAIDALPDDQRRVVGLLRQGFQIDSKDSNIMTIAKMLKCDERTV CCCCCCCCCHHEEEHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH RNRRDRAYKTLRSALQEDA HHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PEPLKSKDKHGAPFTRPPEIEASLGRLEAVDAAARLQAFAVASRKSSGYVPSEALTYFL CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH RRAWAADARDEFKQIFELLMKRVEQSLYSTVADSRMTGAQGIREEIMGRFAERIAKDCQG HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC RFAMLDFFEVRFDLAFARFRKTVLRQIGPASVLTVPLSTDGDEGQDISPEVEAAAADFLG CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCC GDPQKIDDPAFRLELDAAIDALPDDQRRVVGLLRQGFQIDSKDSNIMTIAKMLKCDERTV CCCCCCCCCHHEEEHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH RNRRDRAYKTLRSALQEDA HHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA