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The map label for this gene is abfA [H]

Identifier: 121610389

GI number: 121610389

Start: 3830986

End: 3832506

Strand: Direct

Name: abfA [H]

Synonym: Veis_3457

Alternate gene names: 121610389

Gene position: 3830986-3832506 (Clockwise)

Preceding gene: 121610388

Following gene: 121610390

Centisome position: 68.82

GC content: 63.77

Gene sequence:

>1521_bases
ATGATCTCCACCCGCCTGGTCGTCGATAGCGACTTCGTCATCTCCGCGCTCGATCGCCGCGTGTTCGGTGCTTTTGTCGA
GCACATGGGCCGCTGCGTCTACACGGGCATTTATGAACCCGGCCATCCCAGCGCCGATGCGCACGGCTTTCGCGGCGATG
TCATGGCCTTGACGCGCGAGCTTGGGCCGACCATCGTGCGCTATCCCGGCGGGAACTTCCTGTCGGGCTACCACTGGGAA
GATGGCGTCGGCCCGCAGGAGGCCCGACCGACGCGGCTGGACCTGGCCTGGTTATCGACCGAAACCAACCAGTTTGGCAC
CAACGAGTTTATGGACTGGTGCCGCGCCGTCGGTGTCGAACCGATGTTTGCCGTCAACCTTGGCACCCGGGGGCCTGACC
AGGCCAGGCATTTCCTGGAGTACTGCAACCATCCGGGCGGCACCGCGCTGTCCGACCTGCGCCGCTCGCATGGCTACGAA
GCGCCGCATGGCATCAAGTTCTGGTGCCTGGGCAACGAGCTCGACGGCCCTTGGCAAATCTGCGCCAAGACGGCCCAGGA
GTATGGCCGCATCGCACAAGAGACCGCCAAACTGATGCGCCTGGTCGATCCGGGCGTCGTGCTGGCGGCCTGTGGCTCCT
CCAATCATGGCATGCCGACGTTCGGGCAATGGGAGGACACGGTGCTGGAGCATTGCTTCGACGAGGTGGACTTCATTTCG
CTGCACACCTATTTCGAGAACCCGCACCATTCGAGCGCCGAGTTCCTCGCCAACATCGACCAGATGAATCGCTTCATCGA
GGACACGGTTGCCGTGGCCGACAGCGTGGCGGCGCGCAAGCACTCGCACAAGCGCATCATGCTGTCGTTCGACGAATGGA
ACGTCTGGTACAAGGCGCGCACCCTGGACGATCGCCGCAAGCCAGGCTGGCCGCAGGCGCCACGGCTGATCGAAGAGGTC
TACAACCACGAGGACGCGCTGGCCGTCGGCGGCGCGCTGATCGTGATGATGAACAATGCCGACCGCGTGAAAACGGCCTG
CATGGCGCAACTGGTCAATGTGATCGGCCCCATCATGACCGAGCCGGGAGGTGCGGCATGGCGCCAGACCATCTTCCATC
CGTTTGCACAAGCCTCCCGCTTTGCCCACGGCAGGGTGCTGCGACCGGTGATTCGCTCGCCCGGCTATGAATCGAAGACC
TTCCCGGAAGTGCCCTACCTGTGCGCCTGCGTCGTGCATGACGACGCCACCGGCCAGACCGCCATCTTCGCGCTGAACCG
CCACTTGAGCCAAGAGCAGGAAATCACCATCGAACTGCGCGGCCTGGGCGACCAGCAGCGTCTGGTCGCGGCCTCCGAAC
TGCACCACGCGGACATGAAGGCGGTCAATACGGTGGCGGCTCCGGACACGGTTTCCCCACGGCCCAACTCGCGGGTCGAG
ATCAGTGGCCATCTGGTGACGGCCACATTCAAGCCGGGTTCATGGAATGTGATCGTGACCACGAACGGCAAGCCATCCTG
A

Upstream 100 bases:

>100_bases
GGACATGCAGAACGCCGCCGAGACGCGCGTCAACAAACTGCTCGATTCGGTGCGCTGATGCCCGCCCTCCATCCCCCCTT
TCATCCATCAAGGACAAGAC

Downstream 100 bases:

>100_bases
TTCACGAACCATGAACGTTTCAACAAGATGGCCATGGGCTTTTGGCGCAGCAACCGCAGTGGGCTCCATTGGCCCATTGG
CTCTACCCGGTTACCCGGTG

Product: Alpha-N-arabinofuranosidase

Products: NA

Alternate protein names: Arabinosidase [H]

Number of amino acids: Translated: 506; Mature: 506

Protein sequence:

>506_residues
MISTRLVVDSDFVISALDRRVFGAFVEHMGRCVYTGIYEPGHPSADAHGFRGDVMALTRELGPTIVRYPGGNFLSGYHWE
DGVGPQEARPTRLDLAWLSTETNQFGTNEFMDWCRAVGVEPMFAVNLGTRGPDQARHFLEYCNHPGGTALSDLRRSHGYE
APHGIKFWCLGNELDGPWQICAKTAQEYGRIAQETAKLMRLVDPGVVLAACGSSNHGMPTFGQWEDTVLEHCFDEVDFIS
LHTYFENPHHSSAEFLANIDQMNRFIEDTVAVADSVAARKHSHKRIMLSFDEWNVWYKARTLDDRRKPGWPQAPRLIEEV
YNHEDALAVGGALIVMMNNADRVKTACMAQLVNVIGPIMTEPGGAAWRQTIFHPFAQASRFAHGRVLRPVIRSPGYESKT
FPEVPYLCACVVHDDATGQTAIFALNRHLSQEQEITIELRGLGDQQRLVAASELHHADMKAVNTVAAPDTVSPRPNSRVE
ISGHLVTATFKPGSWNVIVTTNGKPS

Sequences:

>Translated_506_residues
MISTRLVVDSDFVISALDRRVFGAFVEHMGRCVYTGIYEPGHPSADAHGFRGDVMALTRELGPTIVRYPGGNFLSGYHWE
DGVGPQEARPTRLDLAWLSTETNQFGTNEFMDWCRAVGVEPMFAVNLGTRGPDQARHFLEYCNHPGGTALSDLRRSHGYE
APHGIKFWCLGNELDGPWQICAKTAQEYGRIAQETAKLMRLVDPGVVLAACGSSNHGMPTFGQWEDTVLEHCFDEVDFIS
LHTYFENPHHSSAEFLANIDQMNRFIEDTVAVADSVAARKHSHKRIMLSFDEWNVWYKARTLDDRRKPGWPQAPRLIEEV
YNHEDALAVGGALIVMMNNADRVKTACMAQLVNVIGPIMTEPGGAAWRQTIFHPFAQASRFAHGRVLRPVIRSPGYESKT
FPEVPYLCACVVHDDATGQTAIFALNRHLSQEQEITIELRGLGDQQRLVAASELHHADMKAVNTVAAPDTVSPRPNSRVE
ISGHLVTATFKPGSWNVIVTTNGKPS
>Mature_506_residues
MISTRLVVDSDFVISALDRRVFGAFVEHMGRCVYTGIYEPGHPSADAHGFRGDVMALTRELGPTIVRYPGGNFLSGYHWE
DGVGPQEARPTRLDLAWLSTETNQFGTNEFMDWCRAVGVEPMFAVNLGTRGPDQARHFLEYCNHPGGTALSDLRRSHGYE
APHGIKFWCLGNELDGPWQICAKTAQEYGRIAQETAKLMRLVDPGVVLAACGSSNHGMPTFGQWEDTVLEHCFDEVDFIS
LHTYFENPHHSSAEFLANIDQMNRFIEDTVAVADSVAARKHSHKRIMLSFDEWNVWYKARTLDDRRKPGWPQAPRLIEEV
YNHEDALAVGGALIVMMNNADRVKTACMAQLVNVIGPIMTEPGGAAWRQTIFHPFAQASRFAHGRVLRPVIRSPGYESKT
FPEVPYLCACVVHDDATGQTAIFALNRHLSQEQEITIELRGLGDQQRLVAASELHHADMKAVNTVAAPDTVSPRPNSRVE
ISGHLVTATFKPGSWNVIVTTNGKPS

Specific function: Unknown

COG id: COG3534

COG function: function code G; Alpha-L-arabinofuranosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 51 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010720
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF06964 Alpha-L-AF_C [H]

EC number: =3.2.1.55 [H]

Molecular weight: Translated: 56246; Mature: 56246

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISTRLVVDSDFVISALDRRVFGAFVEHMGRCVYTGIYEPGHPSADAHGFRGDVMALTRE
CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
LGPTIVRYPGGNFLSGYHWEDGVGPQEARPTRLDLAWLSTETNQFGTNEFMDWCRAVGVE
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCC
PMFAVNLGTRGPDQARHFLEYCNHPGGTALSDLRRSHGYEAPHGIKFWCLGNELDGPWQI
CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
CAKTAQEYGRIAQETAKLMRLVDPGVVLAACGSSNHGMPTFGQWEDTVLEHCFDEVDFIS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
LHTYFENPHHSSAEFLANIDQMNRFIEDTVAVADSVAARKHSHKRIMLSFDEWNVWYKAR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEE
TLDDRRKPGWPQAPRLIEEVYNHEDALAVGGALIVMMNNADRVKTACMAQLVNVIGPIMT
CCCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
EPGGAAWRQTIFHPFAQASRFAHGRVLRPVIRSPGYESKTFPEVPYLCACVVHDDATGQT
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCE
AIFALNRHLSQEQEITIELRGLGDQQRLVAASELHHADMKAVNTVAAPDTVSPRPNSRVE
EEEEEHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
ISGHLVTATFKPGSWNVIVTTNGKPS
EEEEEEEEEECCCCEEEEEECCCCCC
>Mature Secondary Structure
MISTRLVVDSDFVISALDRRVFGAFVEHMGRCVYTGIYEPGHPSADAHGFRGDVMALTRE
CCCCEEEECCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHH
LGPTIVRYPGGNFLSGYHWEDGVGPQEARPTRLDLAWLSTETNQFGTNEFMDWCRAVGVE
HCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCC
PMFAVNLGTRGPDQARHFLEYCNHPGGTALSDLRRSHGYEAPHGIKFWCLGNELDGPWQI
CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHH
CAKTAQEYGRIAQETAKLMRLVDPGVVLAACGSSNHGMPTFGQWEDTVLEHCFDEVDFIS
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCEEE
LHTYFENPHHSSAEFLANIDQMNRFIEDTVAVADSVAARKHSHKRIMLSFDEWNVWYKAR
EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEE
TLDDRRKPGWPQAPRLIEEVYNHEDALAVGGALIVMMNNADRVKTACMAQLVNVIGPIMT
CCCCCCCCCCCHHHHHHHHHHCCCCCEEECCEEEEEECCCHHHHHHHHHHHHHHHHHHHC
EPGGAAWRQTIFHPFAQASRFAHGRVLRPVIRSPGYESKTFPEVPYLCACVVHDDATGQT
CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCE
AIFALNRHLSQEQEITIELRGLGDQQRLVAASELHHADMKAVNTVAAPDTVSPRPNSRVE
EEEEEHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEE
ISGHLVTATFKPGSWNVIVTTNGKPS
EEEEEEEEEECCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7887599 [H]