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The map label for this gene is ydhO [H]

Identifier: 121609686

GI number: 121609686

Start: 3080560

End: 3081132

Strand: Direct

Name: ydhO [H]

Synonym: Veis_2733

Alternate gene names: 121609686

Gene position: 3080560-3081132 (Clockwise)

Preceding gene: 121609685

Following gene: 121609688

Centisome position: 55.34

GC content: 70.68

Gene sequence:

>573_bases
ATGGCTGCGCGCAGCCTACGACAGCTGATCCGTGACGCGACACTAGTAAGCTCAGGCGCCATGCGCGCATTGCACTGTCT
GGCCTGCGCGGCGGCCCTGCTGGTGCTGGGCGGCTGCGGCACCACCCCGGCACCTTCACCCTCGCCGGCCTACCCCGTTG
CGCCTGCGCAACTGTCGGCGGTTGCGCCCGGGCAACTGTCGGACACGCAGGCGCACGACATCGCCATCCACGCACTGGGT
CTGGTCGGAACGCCCTACCGCCATGGCGGCAACACCCCCGAGGCGGGCTTCGATTGCAGCGGACTGATCGGCTACGTCTA
CCGCCACCGCGTAGGCCGGGCACCGCCGCGCACCGTGGCGCAACTGAGCGCCTGGGGCCAGCCCATTGCCGGCAGCCAAC
TGCGCAGCGGCGACCTGGTGCTGTTCGGCACCGGACGCATCCCCTCGCATGCCGGCATCTATGTGGGCCAGGGGCGCTTT
GTCCATGCGCCGGCGAGCGGCGGCCAGGTGCGGCTGGACCAACTGCAATCGGGCTACTGGGCGCAGCAGGGCGCGTCGTT
CCGGCGGCTTTGA

Upstream 100 bases:

>100_bases
TCTGTCGGTCTGCGCTGGCCATCGAAGCGCATCGCGGCGTTGCATCGCTTGCCAATACAGCTCGGTATGGGCTGCGCGAT
GCGCCTTGCGCTGCGCTCCG

Downstream 100 bases:

>100_bases
AGGGCGCATGGCCCCGGTTCGGGATCGGCTATCCGGGATCGGCTCAAGGGATGGGCGGCGTCACCGACAGCACGATCTCG
GCATCGACGGCACCGCGGTT

Product: NLP/P60 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MAARSLRQLIRDATLVSSGAMRALHCLACAAALLVLGGCGTTPAPSPSPAYPVAPAQLSAVAPGQLSDTQAHDIAIHALG
LVGTPYRHGGNTPEAGFDCSGLIGYVYRHRVGRAPPRTVAQLSAWGQPIAGSQLRSGDLVLFGTGRIPSHAGIYVGQGRF
VHAPASGGQVRLDQLQSGYWAQQGASFRRL

Sequences:

>Translated_190_residues
MAARSLRQLIRDATLVSSGAMRALHCLACAAALLVLGGCGTTPAPSPSPAYPVAPAQLSAVAPGQLSDTQAHDIAIHALG
LVGTPYRHGGNTPEAGFDCSGLIGYVYRHRVGRAPPRTVAQLSAWGQPIAGSQLRSGDLVLFGTGRIPSHAGIYVGQGRF
VHAPASGGQVRLDQLQSGYWAQQGASFRRL
>Mature_189_residues
AARSLRQLIRDATLVSSGAMRALHCLACAAALLVLGGCGTTPAPSPSPAYPVAPAQLSAVAPGQLSDTQAHDIAIHALGL
VGTPYRHGGNTPEAGFDCSGLIGYVYRHRVGRAPPRTVAQLSAWGQPIAGSQLRSGDLVLFGTGRIPSHAGIYVGQGRFV
HAPASGGQVRLDQLQSGYWAQQGASFRRL

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=188, Percent_Identity=31.3829787234043, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1786421, Length=133, Percent_Identity=35.3383458646617, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI1788501, Length=108, Percent_Identity=38.8888888888889, Blast_Score=84, Evalue=5e-18,
Organism=Escherichia coli, GI1788001, Length=110, Percent_Identity=39.0909090909091, Blast_Score=71, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 19672; Mature: 19540

Theoretical pI: Translated: 10.12; Mature: 10.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARSLRQLIRDATLVSSGAMRALHCLACAAALLVLGGCGTTPAPSPSPAYPVAPAQLSA
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCC
VAPGQLSDTQAHDIAIHALGLVGTPYRHGGNTPEAGFDCSGLIGYVYRHRVGRAPPRTVA
CCCCCCCCCCHHHHEEEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
QLSAWGQPIAGSQLRSGDLVLFGTGRIPSHAGIYVGQGRFVHAPASGGQVRLDQLQSGYW
HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCEEEECCCCCCEEEHHHHHCCCC
AQQGASFRRL
HHCCCCCCCC
>Mature Secondary Structure 
AARSLRQLIRDATLVSSGAMRALHCLACAAALLVLGGCGTTPAPSPSPAYPVAPAQLSA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCC
VAPGQLSDTQAHDIAIHALGLVGTPYRHGGNTPEAGFDCSGLIGYVYRHRVGRAPPRTVA
CCCCCCCCCCHHHHEEEEHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHH
QLSAWGQPIAGSQLRSGDLVLFGTGRIPSHAGIYVGQGRFVHAPASGGQVRLDQLQSGYW
HHHHCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEECCEEEECCCCCCEEEHHHHHCCCC
AQQGASFRRL
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]