Definition Verminephrobacter eiseniae EF01-2 chromosome, complete genome.
Accession NC_008786
Length 5,566,749

Click here to switch to the map view.

The map label for this gene is dinG [H]

Identifier: 121609685

GI number: 121609685

Start: 3078226

End: 3080442

Strand: Direct

Name: dinG [H]

Synonym: Veis_2732

Alternate gene names: 121609685

Gene position: 3078226-3080442 (Clockwise)

Preceding gene: 121609684

Following gene: 121609686

Centisome position: 55.3

GC content: 70.59

Gene sequence:

>2217_bases
ATGTCTTCTACCGATTGGGCCCGGCAGGCCCTGCAGGCGTTTGATGCGGTGGTGCAGGCCAGCGACGGATTTTGCAGCCG
CCCCGGCCAGCGGCTGATGGCCGAGCAGGTGGCGCGCACCTTCAGCAGCGCCACCTTGGGCAAGGCGCAAGAGGGCGATG
ACCAGGCCGCGCCCACGCGCTGCATCGCCGTGATACAGGCCGGCACCGGCGTCGGCAAATCGCTGGCCTATTGCGCGCCG
GCCATCGCGCTGGCACTGGCGCGCGGCACGCGGGTGTTGATCTCCACCGCCACGGTGGCATTGCAGGAGCAACTGGTCGA
CAAAGACCTGCCGGCGCTGGCCGCGCGGCTGCCCCAGCCCTTCAAGTTCGTGCTGGCCAAGGGGCGCGGGCGCTATGTGT
GCAAGCTCAAGCTCGGCCGCCTGGCGGGCACCGGCCAGGCCGACGAGGCCCAGGACGACCTGTTGGCCAACGAAGCCGAT
GAGGCCGAGGAGGCCGGCGATCGGGCCGACCGCGCCCGGCGCCCCCGGCATGAGACCGAGGCGCGCATCCGGTGGTACGA
GGCCATGGCGCAAAACCTGGAGCAGGGCGCATGGGACGGCGACCGCGACAGCCTCGATACGCCGCCCGCGCCCGAAGTCT
GGGGCCCCGTGGCGGCCGAGGGCGCATCGTGCTCGGGCAAATACTGTCCGGCCTTCGCGCAGTGCAGCTACTACGACAAA
CGCCGGGCGCTGGTGGGCGCGCAGGTCATCGTGGCCAACCACGACCTGCTGCTGTCGTCGCTGGGCGCGCGCCTGCTGCC
CGAGCTCGACAACTGCCTGCTGGTGCTCGACGAAGCCCACCACCTGCCCGCCACGGCGCTCGAACGGTTTGCCTGCAGCA
TGGACCTGAGCCGCCTGGCATGGATCGAGCGCCTGGCCAGCCACAGCCTGCGCATAGGCGAGCTGCTGCAAGTGCCGGAG
ATTGCCGGCATCCCGCGCTGCGCGGCGCAACTGCGGCAGCAGTTGCAAGACCTGGCGCGCAGCGTGATGCAGTTGTACGG
CGCCGAGCTTGGCAGCCACGAGGACAGTGGGGGCCCGGCGCGGGTGCGCTTGCCCGGTGGCCGGCTGCCCGAGCCGCTCG
TCGCCCCTTTGGGCCTGCTGCTCGGCAGTGCCGACGGCTTTTTGCAGGCCCTGCACGCGACCGCAAAAGCCCTGCGCACC
CAGATGCGCGAGCAGCCCGGGCAGGCGCGCCGCCTGTCCATGCTGTATGCACAGATCGGCATGCAGGCCCCGCGGTTGGA
AGCGCTGCATGCCACCGCGCAATTGCTGCTGCAGGACGCGACCGAAGGACAGGTGCCCGCAGCCAAGTGGTTCACGCTGG
CGCCCGATGGCGACCGGCGCGTGCTCCAGGCGCACGCCAGCCCGATCCTGCCCGGCGCCATGCTGCGCAACCTGTGGAGC
ACGGTGCGCGCTGCGGTGCTGACCTCGGCCACGCTCACCAGTTGCGGGCAGTTCGATTTCTTTTTGCACGAAACGGGCCT
GCAAGACGACGCTGCCGCCAGCACGCTGGAGGTGCCCAGCCCGTTCGACTACACCGCCCAAGGCCGGCTGATCGTCGCCG
AAACCCGCGCCGACCCGAAGAACGCCGCGCAGTTCACCGCCGAGATGGTCGCCGCGCTGCTGCACGACATGGCCCGGGTG
AAATATGGCGCGCTGGTGCTGTTTACCTCGCGCGAGCAAATGCGCCAGGCCGTCGCGGCCCTGCCCACGGCGCTGCACAG
CGTGGTGCTGGTGCAAAACACGCTGCCCCGCGCGCAACTGCTCGGGCGCCACGCCGAGCGCGTGGCCCAAGGCCAGCCCT
CGGTCATCTTCGGCATGCAGTCGTTTGGCGAGGGGCTGGACCTGCCGGGGCGGCTGTGCGAATCGGTATTCATCACCAAG
CTGCCCTTTGCCTCGCCCGACGACCCGGTGGGCCAGGCGCGCGCCGAATGGCTGCGCAGCATGGGGCGCGATCCGTTCAG
CGAACTGGTCGTGCCCGCCACCGCCATCCGCCTGGCGCAATGGGCGGGCCGCGCCATCCGCACCGAACGCGACCAGGCCC
ATGTCTACTGCTACGACAAACGCCTGACGCGCACCAGCTACGGCCAGCGCCTGCTCAAAGGCTTGCCGCCATTTGCGCTG
GAGCAACGCGCGCCGCTGTCCGGCGGCGCAACCGCGCCCGGCGCCGGGCAACCCTAG

Upstream 100 bases:

>100_bases
ATGAAGCGGCGCAACGAAAGCAGCGCAGCGCAGTGAACGGCAAGCAGGCCGCACCTGCGCGCGCCGCCCGTTGCGCCAGC
CATGCCACACTCCGGCCCCT

Downstream 100 bases:

>100_bases
TGTCGCGTCACCGATCATCTGTCGGTCTGCGCTGGCCATCGAAGCGCATCGCGGCGTTGCATCGCTTGCCAATACAGCTC
GGTATGGGCTGCGCGATGCG

Product: ATP-dependent DNA helicase DinG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 738; Mature: 737

Protein sequence:

>738_residues
MSSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTRCIAVIQAGTGVGKSLAYCAP
AIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQPFKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEAD
EAEEAGDRADRARRPRHETEARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK
RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLAWIERLASHSLRIGELLQVPE
IAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPARVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRT
QMREQPGQARRLSMLYAQIGMQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS
TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPKNAAQFTAEMVAALLHDMARV
KYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQLLGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITK
LPFASPDDPVGQARAEWLRSMGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL
EQRAPLSGGATAPGAGQP

Sequences:

>Translated_738_residues
MSSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTRCIAVIQAGTGVGKSLAYCAP
AIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQPFKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEAD
EAEEAGDRADRARRPRHETEARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK
RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLAWIERLASHSLRIGELLQVPE
IAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPARVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRT
QMREQPGQARRLSMLYAQIGMQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS
TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPKNAAQFTAEMVAALLHDMARV
KYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQLLGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITK
LPFASPDDPVGQARAEWLRSMGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL
EQRAPLSGGATAPGAGQP
>Mature_737_residues
SSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTRCIAVIQAGTGVGKSLAYCAPA
IALALARGTRVLISTATVALQEQLVDKDLPALAARLPQPFKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEADE
AEEAGDRADRARRPRHETEARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDKR
RALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLAWIERLASHSLRIGELLQVPEI
AGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPARVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRTQ
MREQPGQARRLSMLYAQIGMQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWST
VRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPKNAAQFTAEMVAALLHDMARVK
YGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQLLGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITKL
PFASPDDPVGQARAEWLRSMGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFALE
QRAPLSGGATAPGAGQP

Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]

COG id: COG1199

COG function: function code KL; Rad3-related DNA helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1787018, Length=722, Percent_Identity=31.994459833795, Blast_Score=301, Evalue=1e-82,
Organism=Escherichia coli, GI1788110, Length=671, Percent_Identity=27.5707898658718, Blast_Score=183, Evalue=3e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010614
- InterPro:   IPR014013
- InterPro:   IPR006555
- InterPro:   IPR001650 [H]

Pfam domain/function: PF06733 DEAD_2 [H]

EC number: =3.6.4.12 [H]

Molecular weight: Translated: 79585; Mature: 79454

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTR
CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
CIAVIQAGTGVGKSLAYCAPAIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQP
HHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCHHHHHHHCCCC
FKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEADEAEEAGDRADRARRPRHETE
HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH
ARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHH
RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLA
HHHHHHHEEEEECHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
WIERLASHSLRIGELLQVPEIAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPA
HHHHHHHCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
RVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRTQMREQPGQARRLSMLYAQIG
EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
MQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCHHHHHHHHH
TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPK
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH
NAAQFTAEMVAALLHDMARVKYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQL
HHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITKLPFASPDDPVGQARAEWLRS
HHHHHHHHHCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
MGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL
HCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHH
EQRAPLSGGATAPGAGQP
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
SSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTR
CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH
CIAVIQAGTGVGKSLAYCAPAIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQP
HHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCHHHHHHHCCCC
FKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEADEAEEAGDRADRARRPRHETE
HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH
ARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHH
RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLA
HHHHHHHEEEEECHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
WIERLASHSLRIGELLQVPEIAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPA
HHHHHHHCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE
RVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRTQMREQPGQARRLSMLYAQIG
EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
MQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS
CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCHHHHHHHHH
TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPK
HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH
NAAQFTAEMVAALLHDMARVKYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQL
HHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
LGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITKLPFASPDDPVGQARAEWLRS
HHHHHHHHHCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
MGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL
HCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHH
EQRAPLSGGATAPGAGQP
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8396546; 8385320 [H]