| Definition | Verminephrobacter eiseniae EF01-2 chromosome, complete genome. |
|---|---|
| Accession | NC_008786 |
| Length | 5,566,749 |
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The map label for this gene is dinG [H]
Identifier: 121609685
GI number: 121609685
Start: 3078226
End: 3080442
Strand: Direct
Name: dinG [H]
Synonym: Veis_2732
Alternate gene names: 121609685
Gene position: 3078226-3080442 (Clockwise)
Preceding gene: 121609684
Following gene: 121609686
Centisome position: 55.3
GC content: 70.59
Gene sequence:
>2217_bases ATGTCTTCTACCGATTGGGCCCGGCAGGCCCTGCAGGCGTTTGATGCGGTGGTGCAGGCCAGCGACGGATTTTGCAGCCG CCCCGGCCAGCGGCTGATGGCCGAGCAGGTGGCGCGCACCTTCAGCAGCGCCACCTTGGGCAAGGCGCAAGAGGGCGATG ACCAGGCCGCGCCCACGCGCTGCATCGCCGTGATACAGGCCGGCACCGGCGTCGGCAAATCGCTGGCCTATTGCGCGCCG GCCATCGCGCTGGCACTGGCGCGCGGCACGCGGGTGTTGATCTCCACCGCCACGGTGGCATTGCAGGAGCAACTGGTCGA CAAAGACCTGCCGGCGCTGGCCGCGCGGCTGCCCCAGCCCTTCAAGTTCGTGCTGGCCAAGGGGCGCGGGCGCTATGTGT GCAAGCTCAAGCTCGGCCGCCTGGCGGGCACCGGCCAGGCCGACGAGGCCCAGGACGACCTGTTGGCCAACGAAGCCGAT GAGGCCGAGGAGGCCGGCGATCGGGCCGACCGCGCCCGGCGCCCCCGGCATGAGACCGAGGCGCGCATCCGGTGGTACGA GGCCATGGCGCAAAACCTGGAGCAGGGCGCATGGGACGGCGACCGCGACAGCCTCGATACGCCGCCCGCGCCCGAAGTCT GGGGCCCCGTGGCGGCCGAGGGCGCATCGTGCTCGGGCAAATACTGTCCGGCCTTCGCGCAGTGCAGCTACTACGACAAA CGCCGGGCGCTGGTGGGCGCGCAGGTCATCGTGGCCAACCACGACCTGCTGCTGTCGTCGCTGGGCGCGCGCCTGCTGCC CGAGCTCGACAACTGCCTGCTGGTGCTCGACGAAGCCCACCACCTGCCCGCCACGGCGCTCGAACGGTTTGCCTGCAGCA TGGACCTGAGCCGCCTGGCATGGATCGAGCGCCTGGCCAGCCACAGCCTGCGCATAGGCGAGCTGCTGCAAGTGCCGGAG ATTGCCGGCATCCCGCGCTGCGCGGCGCAACTGCGGCAGCAGTTGCAAGACCTGGCGCGCAGCGTGATGCAGTTGTACGG CGCCGAGCTTGGCAGCCACGAGGACAGTGGGGGCCCGGCGCGGGTGCGCTTGCCCGGTGGCCGGCTGCCCGAGCCGCTCG TCGCCCCTTTGGGCCTGCTGCTCGGCAGTGCCGACGGCTTTTTGCAGGCCCTGCACGCGACCGCAAAAGCCCTGCGCACC CAGATGCGCGAGCAGCCCGGGCAGGCGCGCCGCCTGTCCATGCTGTATGCACAGATCGGCATGCAGGCCCCGCGGTTGGA AGCGCTGCATGCCACCGCGCAATTGCTGCTGCAGGACGCGACCGAAGGACAGGTGCCCGCAGCCAAGTGGTTCACGCTGG CGCCCGATGGCGACCGGCGCGTGCTCCAGGCGCACGCCAGCCCGATCCTGCCCGGCGCCATGCTGCGCAACCTGTGGAGC ACGGTGCGCGCTGCGGTGCTGACCTCGGCCACGCTCACCAGTTGCGGGCAGTTCGATTTCTTTTTGCACGAAACGGGCCT GCAAGACGACGCTGCCGCCAGCACGCTGGAGGTGCCCAGCCCGTTCGACTACACCGCCCAAGGCCGGCTGATCGTCGCCG AAACCCGCGCCGACCCGAAGAACGCCGCGCAGTTCACCGCCGAGATGGTCGCCGCGCTGCTGCACGACATGGCCCGGGTG AAATATGGCGCGCTGGTGCTGTTTACCTCGCGCGAGCAAATGCGCCAGGCCGTCGCGGCCCTGCCCACGGCGCTGCACAG CGTGGTGCTGGTGCAAAACACGCTGCCCCGCGCGCAACTGCTCGGGCGCCACGCCGAGCGCGTGGCCCAAGGCCAGCCCT CGGTCATCTTCGGCATGCAGTCGTTTGGCGAGGGGCTGGACCTGCCGGGGCGGCTGTGCGAATCGGTATTCATCACCAAG CTGCCCTTTGCCTCGCCCGACGACCCGGTGGGCCAGGCGCGCGCCGAATGGCTGCGCAGCATGGGGCGCGATCCGTTCAG CGAACTGGTCGTGCCCGCCACCGCCATCCGCCTGGCGCAATGGGCGGGCCGCGCCATCCGCACCGAACGCGACCAGGCCC ATGTCTACTGCTACGACAAACGCCTGACGCGCACCAGCTACGGCCAGCGCCTGCTCAAAGGCTTGCCGCCATTTGCGCTG GAGCAACGCGCGCCGCTGTCCGGCGGCGCAACCGCGCCCGGCGCCGGGCAACCCTAG
Upstream 100 bases:
>100_bases ATGAAGCGGCGCAACGAAAGCAGCGCAGCGCAGTGAACGGCAAGCAGGCCGCACCTGCGCGCGCCGCCCGTTGCGCCAGC CATGCCACACTCCGGCCCCT
Downstream 100 bases:
>100_bases TGTCGCGTCACCGATCATCTGTCGGTCTGCGCTGGCCATCGAAGCGCATCGCGGCGTTGCATCGCTTGCCAATACAGCTC GGTATGGGCTGCGCGATGCG
Product: ATP-dependent DNA helicase DinG
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 738; Mature: 737
Protein sequence:
>738_residues MSSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTRCIAVIQAGTGVGKSLAYCAP AIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQPFKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEAD EAEEAGDRADRARRPRHETEARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLAWIERLASHSLRIGELLQVPE IAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPARVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRT QMREQPGQARRLSMLYAQIGMQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPKNAAQFTAEMVAALLHDMARV KYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQLLGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITK LPFASPDDPVGQARAEWLRSMGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL EQRAPLSGGATAPGAGQP
Sequences:
>Translated_738_residues MSSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTRCIAVIQAGTGVGKSLAYCAP AIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQPFKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEAD EAEEAGDRADRARRPRHETEARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLAWIERLASHSLRIGELLQVPE IAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPARVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRT QMREQPGQARRLSMLYAQIGMQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPKNAAQFTAEMVAALLHDMARV KYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQLLGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITK LPFASPDDPVGQARAEWLRSMGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL EQRAPLSGGATAPGAGQP >Mature_737_residues SSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTRCIAVIQAGTGVGKSLAYCAPA IALALARGTRVLISTATVALQEQLVDKDLPALAARLPQPFKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEADE AEEAGDRADRARRPRHETEARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDKR RALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLAWIERLASHSLRIGELLQVPEI AGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPARVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRTQ MREQPGQARRLSMLYAQIGMQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWST VRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPKNAAQFTAEMVAALLHDMARVK YGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQLLGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITKL PFASPDDPVGQARAEWLRSMGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFALE QRAPLSGGATAPGAGQP
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1787018, Length=722, Percent_Identity=31.994459833795, Blast_Score=301, Evalue=1e-82, Organism=Escherichia coli, GI1788110, Length=671, Percent_Identity=27.5707898658718, Blast_Score=183, Evalue=3e-47,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 79585; Mature: 79454
Theoretical pI: Translated: 7.32; Mature: 7.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTR CCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH CIAVIQAGTGVGKSLAYCAPAIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQP HHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCHHHHHHHCCCC FKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEADEAEEAGDRADRARRPRHETE HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH ARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHH RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLA HHHHHHHEEEEECHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH WIERLASHSLRIGELLQVPEIAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPA HHHHHHHCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE RVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRTQMREQPGQARRLSMLYAQIG EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC MQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCHHHHHHHHH TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPK HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH NAAQFTAEMVAALLHDMARVKYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQL HHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITKLPFASPDDPVGQARAEWLRS HHHHHHHHHCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH MGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL HCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHH EQRAPLSGGATAPGAGQP CCCCCCCCCCCCCCCCCC >Mature Secondary Structure SSTDWARQALQAFDAVVQASDGFCSRPGQRLMAEQVARTFSSATLGKAQEGDDQAAPTR CCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHH CIAVIQAGTGVGKSLAYCAPAIALALARGTRVLISTATVALQEQLVDKDLPALAARLPQP HHHHEECCCCCCHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHCCHHHHHHHCCCC FKFVLAKGRGRYVCKLKLGRLAGTGQADEAQDDLLANEADEAEEAGDRADRARRPRHETE HHHHHCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHH ARIRWYEAMAQNLEQGAWDGDRDSLDTPPAPEVWGPVAAEGASCSGKYCPAFAQCSYYDK HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCHHHH RRALVGAQVIVANHDLLLSSLGARLLPELDNCLLVLDEAHHLPATALERFACSMDLSRLA HHHHHHHEEEEECHHHHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH WIERLASHSLRIGELLQVPEIAGIPRCAAQLRQQLQDLARSVMQLYGAELGSHEDSGGPA HHHHHHHCCCCHHHHHCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCE RVRLPGGRLPEPLVAPLGLLLGSADGFLQALHATAKALRTQMREQPGQARRLSMLYAQIG EEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC MQAPRLEALHATAQLLLQDATEGQVPAAKWFTLAPDGDRRVLQAHASPILPGAMLRNLWS CCCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCHHHHHHHCCCCCCHHHHHHHHH TVRAAVLTSATLTSCGQFDFFLHETGLQDDAAASTLEVPSPFDYTAQGRLIVAETRADPK HHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCH NAAQFTAEMVAALLHDMARVKYGALVLFTSREQMRQAVAALPTALHSVVLVQNTLPRAQL HHHHHHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH LGRHAERVAQGQPSVIFGMQSFGEGLDLPGRLCESVFITKLPFASPDDPVGQARAEWLRS HHHHHHHHHCCCCCEEEEHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH MGRDPFSELVVPATAIRLAQWAGRAIRTERDQAHVYCYDKRLTRTSYGQRLLKGLPPFAL HCCCCHHHHHHHHHHHHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCHHH EQRAPLSGGATAPGAGQP CCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8396546; 8385320 [H]