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The map label for this gene is yckA [H]

Identifier: 121609555

GI number: 121609555

Start: 2941819

End: 2942469

Strand: Direct

Name: yckA [H]

Synonym: Veis_2599

Alternate gene names: 121609555

Gene position: 2941819-2942469 (Clockwise)

Preceding gene: 121609554

Following gene: 121609556

Centisome position: 52.85

GC content: 63.75

Gene sequence:

>651_bases
ATGATCCGCGACTTCGGCAGCGTCGAATTCCTCTACCTGCTGGCCGCGATGCGCTGGACGCTCGGCCTGTCGGTGCTGGC
CTTCGTCTGTGGCGGCATCGTGGGCCTGGTGCTGGCGCTCGCGCGCGTCGCGCCCGTCGCGCCGCTGCGCTGGCTTGCAG
CGGGCTACATACAGCTGTTCCAGGCCACGCCACTGCTGATGCTGCTGTTTCTCGTGTTCTTCGGTCTGGCCCTGTTCGAC
CTGGGCCAGAGCGCCTTTCTTTCGGTGACCATCGCATTGACCTGCTACGCCAGCGCGTACTTCGGCGAAATCTGGCGCGG
CTCGATACAGTCCGTGCCGCAGACGCAATGGCAAGGCTCGGCGGCCCTCGGGTTCTCCTACCTCGAACAGATGCGACATG
TGGTGCTGCCGCAATCAGTGCGCATCGCCACGCCACCGACCGTGGGATTCATGGTCCAGTTGGTGAAGAACACCTCGCTG
GCCTCGATCATCGGCATGCACGAACTCGCCCACGCCGCGCAGTACGTCAACAACGTCACCCTCCGGCCGATCCTCGTCTA
CGGGGTGGTCGGCGCGATGTACTTCGCTGTCTGCTGGCCCCTGTACATGCTGTCGCGGCGGCTGGAGAAAAAGTTCAATG
CCAATCGTTGA

Upstream 100 bases:

>100_bases
TCTACATCGTCGTGACGGGCATCTACCTGGCCATCGCGTTTTCGCTCAAACTGGTGTTCGCCGCCGTCGAGCGCTTTTAC
TTTCAGTCGCGGGGGCGCGC

Downstream 100 bases:

>100_bases
GATCTCTTGCCTGCGCAAGCAATTCGGCCAGGCCACGGTGCTCGACGGCGTTGATCTGCAGGTGGCCGAGGGCGAGGTGG
TCGCCATCATCGGACGCTCG

Product: polar amino acid ABC transporter inner membrane subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MIRDFGSVEFLYLLAAMRWTLGLSVLAFVCGGIVGLVLALARVAPVAPLRWLAAGYIQLFQATPLLMLLFLVFFGLALFD
LGQSAFLSVTIALTCYASAYFGEIWRGSIQSVPQTQWQGSAALGFSYLEQMRHVVLPQSVRIATPPTVGFMVQLVKNTSL
ASIIGMHELAHAAQYVNNVTLRPILVYGVVGAMYFAVCWPLYMLSRRLEKKFNANR

Sequences:

>Translated_216_residues
MIRDFGSVEFLYLLAAMRWTLGLSVLAFVCGGIVGLVLALARVAPVAPLRWLAAGYIQLFQATPLLMLLFLVFFGLALFD
LGQSAFLSVTIALTCYASAYFGEIWRGSIQSVPQTQWQGSAALGFSYLEQMRHVVLPQSVRIATPPTVGFMVQLVKNTSL
ASIIGMHELAHAAQYVNNVTLRPILVYGVVGAMYFAVCWPLYMLSRRLEKKFNANR
>Mature_216_residues
MIRDFGSVEFLYLLAAMRWTLGLSVLAFVCGGIVGLVLALARVAPVAPLRWLAAGYIQLFQATPLLMLLFLVFFGLALFD
LGQSAFLSVTIALTCYASAYFGEIWRGSIQSVPQTQWQGSAALGFSYLEQMRHVVLPQSVRIATPPTVGFMVQLVKNTSL
ASIIGMHELAHAAQYVNNVTLRPILVYGVVGAMYFAVCWPLYMLSRRLEKKFNANR

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=202, Percent_Identity=35.1485148514851, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1788645, Length=202, Percent_Identity=29.2079207920792, Blast_Score=91, Evalue=4e-20,
Organism=Escherichia coli, GI1787030, Length=203, Percent_Identity=28.0788177339901, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1786873, Length=208, Percent_Identity=27.8846153846154, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787086, Length=209, Percent_Identity=29.1866028708134, Blast_Score=86, Evalue=1e-18,
Organism=Escherichia coli, GI87082239, Length=191, Percent_Identity=28.2722513089005, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI1786874, Length=183, Percent_Identity=28.9617486338798, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1787087, Length=229, Percent_Identity=24.8908296943231, Blast_Score=74, Evalue=6e-15,
Organism=Escherichia coli, GI1788646, Length=197, Percent_Identity=26.9035532994924, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI48994930, Length=82, Percent_Identity=37.8048780487805, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23860; Mature: 23860

Theoretical pI: Translated: 9.78; Mature: 9.78

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRDFGSVEFLYLLAAMRWTLGLSVLAFVCGGIVGLVLALARVAPVAPLRWLAAGYIQLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QATPLLMLLFLVFFGLALFDLGQSAFLSVTIALTCYASAYFGEIWRGSIQSVPQTQWQGS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
AALGFSYLEQMRHVVLPQSVRIATPPTVGFMVQLVKNTSLASIIGMHELAHAAQYVNNVT
HHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
LRPILVYGVVGAMYFAVCWPLYMLSRRLEKKFNANR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MIRDFGSVEFLYLLAAMRWTLGLSVLAFVCGGIVGLVLALARVAPVAPLRWLAAGYIQLF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
QATPLLMLLFLVFFGLALFDLGQSAFLSVTIALTCYASAYFGEIWRGSIQSVPQTQWQGS
HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCC
AALGFSYLEQMRHVVLPQSVRIATPPTVGFMVQLVKNTSLASIIGMHELAHAAQYVNNVT
HHHHHHHHHHHHHHHCCCCCEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC
LRPILVYGVVGAMYFAVCWPLYMLSRRLEKKFNANR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]