Click here to switch to the map view.

The map label for this gene is pdtaR [H]

Identifier: 121609545

GI number: 121609545

Start: 2929543

End: 2930169

Strand: Direct

Name: pdtaR [H]

Synonym: Veis_2589

Alternate gene names: 121609545

Gene position: 2929543-2930169 (Clockwise)

Preceding gene: 121609544

Following gene: 121609546

Centisome position: 52.63

GC content: 66.83

Gene sequence:

>627_bases
ATGAATCAGGCTTTGCGCATCGTGGTGGTGGCCCCGGATCTGGCCGTTGCCGACCCTGAGGACGAACATGCCCTGCAGCA
GGCCGAGCGCGCGCGGGCGCTGCACATCGGGCTGCTGGAAAACAACTTCAACCTGGTGGCCACGCTGCCCGCCGATGTCT
TTCTGAGCGAGCGGATCGCCCAGTTGCAGCCCGACCTGATCATCGTCGACGCCGAGAGCGATGCGCGCGATGCGCTCGAG
CATGTGGTGCTGGCCACTCGCGATGCCCGCCGGCCCATCGTGCTGTTCACCAACGACGAGGACCGCGCGCTGGTCAAGGA
CGCGGTGGCCGCCGGCGTCTCGGCCTACATCGTGGCCGGCCTGTCCACGCAACGCATCCGCCCGATTCTGGATGTGGCGC
TGGCGCGCTTTCAGCACGAACAGGCGCTGCGCGCCGAACTGGCCGATGCCCGCACGGCCTTGCGTGAGCGCAAGACCATA
GACCGCGCCAAGGGTCTGCTGATGCAGCGCCAGGGCCTGAGCGAACAGGCGGCCTACGAAAAGCTGCGCAAATCGGCGAT
GGACAAGGGCCTCAAGCTCGGCGATGTGGCCCAGCGCATGCTCGACGCGATGGAATTGCTGGGCTGA

Upstream 100 bases:

>100_bases
GCCATGGCCCTGAGCGCAAGCGCCATCGGGCGCTTGCGCCCGAACGCTGCCGCTGCGCGGCGCGCAAATCCGTGGCGTAA
AAATTGCACACGCCATCGGC

Downstream 100 bases:

>100_bases
CAGTGCCGGTCTGCACTGGCAGCCGGCACCCTTGATGGTGCGCTGCACAAATACGGTGCAGCCCGGCGTTTCCCGGGCAT
CCATTCCCCCGCTGGCCACG

Product: Fis family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 208; Mature: 208

Protein sequence:

>208_residues
MNQALRIVVVAPDLAVADPEDEHALQQAERARALHIGLLENNFNLVATLPADVFLSERIAQLQPDLIIVDAESDARDALE
HVVLATRDARRPIVLFTNDEDRALVKDAVAAGVSAYIVAGLSTQRIRPILDVALARFQHEQALRAELADARTALRERKTI
DRAKGLLMQRQGLSEQAAYEKLRKSAMDKGLKLGDVAQRMLDAMELLG

Sequences:

>Translated_208_residues
MNQALRIVVVAPDLAVADPEDEHALQQAERARALHIGLLENNFNLVATLPADVFLSERIAQLQPDLIIVDAESDARDALE
HVVLATRDARRPIVLFTNDEDRALVKDAVAAGVSAYIVAGLSTQRIRPILDVALARFQHEQALRAELADARTALRERKTI
DRAKGLLMQRQGLSEQAAYEKLRKSAMDKGLKLGDVAQRMLDAMELLG
>Mature_208_residues
MNQALRIVVVAPDLAVADPEDEHALQQAERARALHIGLLENNFNLVATLPADVFLSERIAQLQPDLIIVDAESDARDALE
HVVLATRDARRPIVLFTNDEDRALVKDAVAAGVSAYIVAGLSTQRIRPILDVALARFQHEQALRAELADARTALRERKTI
DRAKGLLMQRQGLSEQAAYEKLRKSAMDKGLKLGDVAQRMLDAMELLG

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22915; Mature: 22915

Theoretical pI: Translated: 5.38; Mature: 5.38

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQALRIVVVAPDLAVADPEDEHALQQAERARALHIGLLENNFNLVATLPADVFLSERIA
CCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHEEEEEECCCEEEEECCHHHHHHHHHH
QLQPDLIIVDAESDARDALEHVVLATRDARRPIVLFTNDEDRALVKDAVAAGVSAYIVAG
HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHC
LSTQRIRPILDVALARFQHEQALRAELADARTALRERKTIDRAKGLLMQRQGLSEQAAYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KLRKSAMDKGLKLGDVAQRMLDAMELLG
HHHHHHHHCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNQALRIVVVAPDLAVADPEDEHALQQAERARALHIGLLENNFNLVATLPADVFLSERIA
CCCCEEEEEECCCCEECCCCHHHHHHHHHHHHHHEEEEEECCCEEEEECCHHHHHHHHHH
QLQPDLIIVDAESDARDALEHVVLATRDARRPIVLFTNDEDRALVKDAVAAGVSAYIVAG
HCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHC
LSTQRIRPILDVALARFQHEQALRAELADARTALRERKTIDRAKGLLMQRQGLSEQAAYE
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KLRKSAMDKGLKLGDVAQRMLDAMELLG
HHHHHHHHCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]