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The map label for this gene is araC [H]

Identifier: 121609530

GI number: 121609530

Start: 2907714

End: 2908745

Strand: Direct

Name: araC [H]

Synonym: Veis_2574

Alternate gene names: 121609530

Gene position: 2907714-2908745 (Clockwise)

Preceding gene: 121609528

Following gene: 121609535

Centisome position: 52.23

GC content: 68.41

Gene sequence:

>1032_bases
GTGGCGCAGGCAGCCGGTTCAATAGCCGGATTCATCCAAAACATGCATATTCCGAACATGGACGGCATTCAGTCATACAG
CTTGTTCGGCGAGTCCCGGCATCTGCCCGATGTGCTGCATTGCGAGACGATTGCCGCGCGCTCGGTGCTGCATGGCTGGG
AACTGGCGCCACACCGGCATCTGCGGCTGCACCAGTTGCTGCTGATCGAGTCAGGCAGTGGCAGCGCGCAGTTGGACGGC
GACCGGCAGGCGCTTTTTGCTGGCGCGCTGATCAACGTGCCCCCCGGCCATGTGCACGCCTTTCGCTTTCAGCCGCACAC
GCAGGGCTGGGTCACCACGCTGGCCGACGAGTTCATGGACCAGCTTTTCGTGCGCGTGGGCGATGTGCGGCGGGATCTGG
CGCGGCCCGCGATCGTGCGGGCCGACCCATGGATCCGCCAGACCATGGGCCAGATCTGGCAGGAATTTTCCGGCCGCTCC
AAAGCCCGCGCCCTGGTGCTGCGCGGGCTGAGCGCCTGCTTGCTCGGCTGGACGGCCCGGGCCATGGCGCACAACGCGCC
CGCCGAGGTGCCTGTCCATGCGCCCGCGCATATGTCCACGCATATGTCCACGCCCGCGCCCGCCGCCATGCCCGCAAGCA
CGCCCGCACCGGAGTCGGACCTGTTGCAGCGGCTGCAAGCACTGATAGAGGCGCATTTTGCGCAGCCCTGGCGGGTGGCC
GACTACGCCCGCGCGCTGTGTGTTTCGCCGACCCACCTGAGCCGGGTGGCCCGGGCCAGCACCGGCGTGTCTGCGCTGCG
TTTGATCGAGGCCCGGCGGATGCGCGAAGCGCGGCGCAACCTGGCCTACACCCACCTGAGCATCGCCACGATTGCCGACA
CCCTGGGCTATACCGACCCGGCGTACTTCAGCCGCGCCTTCACCCGCGATGCCGGCCTGTCGCCACGCAGTTTCAGGGCG
CAGGTCTCGGCACCGGGGCCGGGCCAACCCCCCGGCAAGAGCGCACAGCGCGCTGGTCCCGGGTCTTCGTGA

Upstream 100 bases:

>100_bases
ACCGAGCGTATTGGCAAGCGATGCAACGCCGCGATGCGCTTCGATGGCCAGCGCAGACCGACAGATGATCGGTGACGCGA
CACTAGGAGCCGGACGATAC

Downstream 100 bases:

>100_bases
CCCCGGGTCTTCGTGACGGTGCCCGGCCCGGTGACTTTCCATCCCGCCCGGCCTCTGCGCAGATGCTTTGGCCCCCATGG
GTACTTTGCCCGCCCGAGAC

Product: helix-turn-helix domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 342

Protein sequence:

>343_residues
MAQAAGSIAGFIQNMHIPNMDGIQSYSLFGESRHLPDVLHCETIAARSVLHGWELAPHRHLRLHQLLLIESGSGSAQLDG
DRQALFAGALINVPPGHVHAFRFQPHTQGWVTTLADEFMDQLFVRVGDVRRDLARPAIVRADPWIRQTMGQIWQEFSGRS
KARALVLRGLSACLLGWTARAMAHNAPAEVPVHAPAHMSTHMSTPAPAAMPASTPAPESDLLQRLQALIEAHFAQPWRVA
DYARALCVSPTHLSRVARASTGVSALRLIEARRMREARRNLAYTHLSIATIADTLGYTDPAYFSRAFTRDAGLSPRSFRA
QVSAPGPGQPPGKSAQRAGPGSS

Sequences:

>Translated_343_residues
MAQAAGSIAGFIQNMHIPNMDGIQSYSLFGESRHLPDVLHCETIAARSVLHGWELAPHRHLRLHQLLLIESGSGSAQLDG
DRQALFAGALINVPPGHVHAFRFQPHTQGWVTTLADEFMDQLFVRVGDVRRDLARPAIVRADPWIRQTMGQIWQEFSGRS
KARALVLRGLSACLLGWTARAMAHNAPAEVPVHAPAHMSTHMSTPAPAAMPASTPAPESDLLQRLQALIEAHFAQPWRVA
DYARALCVSPTHLSRVARASTGVSALRLIEARRMREARRNLAYTHLSIATIADTLGYTDPAYFSRAFTRDAGLSPRSFRA
QVSAPGPGQPPGKSAQRAGPGSS
>Mature_342_residues
AQAAGSIAGFIQNMHIPNMDGIQSYSLFGESRHLPDVLHCETIAARSVLHGWELAPHRHLRLHQLLLIESGSGSAQLDGD
RQALFAGALINVPPGHVHAFRFQPHTQGWVTTLADEFMDQLFVRVGDVRRDLARPAIVRADPWIRQTMGQIWQEFSGRSK
ARALVLRGLSACLLGWTARAMAHNAPAEVPVHAPAHMSTHMSTPAPAAMPASTPAPESDLLQRLQALIEAHFAQPWRVAD
YARALCVSPTHLSRVARASTGVSALRLIEARRMREARRNLAYTHLSIATIADTLGYTDPAYFSRAFTRDAGLSPRSFRAQ
VSAPGPGQPPGKSAQRAGPGSS

Specific function: This protein controls the expression of at least six genes that are involved in the transport and catabolism of L- arabinose. It regulates initiation of transcription of the araBAD operon and it also controls its own synthesis. The L-arabinose operon disp

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786251, Length=266, Percent_Identity=25.187969924812, Blast_Score=69, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 37299; Mature: 37168

Theoretical pI: Translated: 10.62; Mature: 10.62

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAAGSIAGFIQNMHIPNMDGIQSYSLFGESRHLPDVLHCETIAARSVLHGWELAPHRH
CCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
LRLHQLLLIESGSGSAQLDGDRQALFAGALINVPPGHVHAFRFQPHTQGWVTTLADEFMD
HEEEEEEEEECCCCCCEECCCHHHHHHCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHH
QLFVRVGDVRRDLARPAIVRADPWIRQTMGQIWQEFSGRSKARALVLRGLSACLLGWTAR
HHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AMAHNAPAEVPVHAPAHMSTHMSTPAPAAMPASTPAPESDLLQRLQALIEAHFAQPWRVA
HHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
DYARALCVSPTHLSRVARASTGVSALRLIEARRMREARRNLAYTHLSIATIADTLGYTDP
HHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AYFSRAFTRDAGLSPRSFRAQVSAPGPGQPPGKSAQRAGPGSS
HHHHHHHHHCCCCCCHHCEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQAAGSIAGFIQNMHIPNMDGIQSYSLFGESRHLPDVLHCETIAARSVLHGWELAPHRH
CCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHH
LRLHQLLLIESGSGSAQLDGDRQALFAGALINVPPGHVHAFRFQPHTQGWVTTLADEFMD
HEEEEEEEEECCCCCCEECCCHHHHHHCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHH
QLFVRVGDVRRDLARPAIVRADPWIRQTMGQIWQEFSGRSKARALVLRGLSACLLGWTAR
HHHHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
AMAHNAPAEVPVHAPAHMSTHMSTPAPAAMPASTPAPESDLLQRLQALIEAHFAQPWRVA
HHHCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
DYARALCVSPTHLSRVARASTGVSALRLIEARRMREARRNLAYTHLSIATIADTLGYTDP
HHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
AYFSRAFTRDAGLSPRSFRAQVSAPGPGQPPGKSAQRAGPGSS
HHHHHHHHHCCCCCCHHCEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3902795 [H]