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The map label for this gene is ydcM [C]

Identifier: 121638766

GI number: 121638766

Start: 3148161

End: 3149480

Strand: Reverse

Name: ydcM [C]

Synonym: BCG_2906c

Alternate gene names: 121638766

Gene position: 3149480-3148161 (Counterclockwise)

Preceding gene: 121638767

Following gene: 121638764

Centisome position: 72.0

GC content: 65.3

Gene sequence:

>1320_bases
GTGATGGCGCGCTTAAAGGTGCCTGAGGGGTGGTGTGTGCAGGCGTTTCGGTTCACGCTGAACCCGACCCAGACGCAAGC
TGCCAGCTTGGCGCGCCATTTTGGTGCTCGCCGTAAGGCATTCAACTGGACCGTCACGGCGCTTAAAGCCGACATCAAGG
CGTGGCGCGCGGATGGCACCGAGTCGGCGAAGCCGTCGCTGCGGGTGTTGCGCAAACGGTGGAACACGGTCAAAGACCAG
GTGTGTGTCAACGCGCAGACCGGGCAGGTGTGGTGGCCGGAATGCTCGAAAGAGGCCTATGCCGATGGCATCGCGGGCGC
GGTCGATGCGTATTGGAACTGGCAGAGCTGCCGTGCCGGGAAACGGGCTGGCAAAACAGTAGGCGTTCCCCGGTTTAAGA
AGAAGGGACGCGACGCCGATCGCGTGTGCTTCACGACCGGTGCGATGCGTGTGGAGCCCGACCGCCGCCACCTCACCTTG
CCGGTGATCGGCACCATCCGTACGTACGAGAACACCCGCCGGGTTGAGCGGCTCATCGCCAAAGGTCGGGCGCGGGTGCT
GGCGATCACCGTGCGCCGCAACGGCACCCGCCTGGATGCGAGCGTGCGGGTGCTCGTCCAACGCCCCCAACAGCGGCGTG
TGGCGCTTCCTGATTCACGGGTGGGTGTCGACGTTGGTGTGCGGCGTTTGGCCACTGTTGCAGACGCTGAGGGCACGGTG
CTTGAACAAGTGCCGAATCCTCGCCCGCTTGATGCTGCGTTGCGCGGGTTGCGCCGCGTCAGCCGCGCACGCTCACGCTG
CACGAAAGGCTCACGCCGCTACTGTGAGCGCACCACCGAACTGTCCCGGCTGCACCGTCGGGTCAACGATGTCCGTACCC
ACCACCTGCACGTGCTGACAACACGATTGGCCAAAACCCACGGCCGTATCGTTGTCGAAGGTCTGGATGCGGCGGGAATG
CTGCGGCAAAAGGGACTGCCGGGGGCGCGCGCCAGACGGCGCGCACTGTCTGATGCAGCCCTGGCAACCCCGCGCCGTCA
CCTGTCCTACAAGACAGGCTGGTACGGATCGAGTCTGGTGGTCGCCGACCGCTGGTTCCCATCGTCGAAAACCTGCCATG
CCTGCCGGCATGTGCAAGACATCGGCTGGGACGAAATATGGCAATGCGACGGCTGTTCGATCACGCACCAACGTGACGAC
AACGCCGCGATCAACCTCGCACGCTACGAGGAACCACCTAGCGTCGTCGGCCCAGTTGGGGCCGCCGTCAAGCGTGGAGC
CGACCGTAAGACCGGGCCTGGCCCGGCCGGGTGGCCGTGA

Upstream 100 bases:

>100_bases
TGACGTCGATATGTGCGCGGCTCTACGGCAAACGCGCTGCTGGCAACCGTGCTGCGCGTGCCGTGGCCGCGGCGGCACGC
GCCGGGGGACACGAGGCTAG

Downstream 100 bases:

>100_bases
AGCGCGGAAGGCAACCGGCCACCCGGCCGGCGAACAACCCCGAGACGGGGTGCAAGTCAAGTGACCACTAAAGATCACTC
ACTTGCAACGGTTTAGTATC

Product: putative transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGTESAKPSLRVLRKRWNTVKDQ
VCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTL
PVIGTIRTYENTRRVERLIAKGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLTTRLAKTHGRIVVEGLDAAGM
LRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLVVADRWFPSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDD
NAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGWP

Sequences:

>Translated_439_residues
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGTESAKPSLRVLRKRWNTVKDQ
VCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTL
PVIGTIRTYENTRRVERLIAKGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLTTRLAKTHGRIVVEGLDAAGM
LRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLVVADRWFPSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDD
NAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGWP
>Mature_439_residues
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGTESAKPSLRVLRKRWNTVKDQ
VCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAGKRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTL
PVIGTIRTYENTRRVERLIAKGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLTTRLAKTHGRIVVEGLDAAGM
LRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLVVADRWFPSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDD
NAAINLARYEEPPSVVGPVGAAVKRGADRKTGPGPAGWP

Specific function: Unknown

COG id: COG0675

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the transposase 35 family [H]

Homologues:

Organism=Escherichia coli, GI288549314, Length=297, Percent_Identity=27.6094276094276, Blast_Score=93, Evalue=3e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001959
- InterPro:   IPR010095
- InterPro:   IPR021027 [H]

Pfam domain/function: PF12323 HTH_14; PF01385 Transposase_2; PF07282 Transposase_35 [H]

EC number: NA

Molecular weight: Translated: 49126; Mature: 49126

Theoretical pI: Translated: 11.66; Mature: 11.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGT
CCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCC
ESAKPSLRVLRKRWNTVKDQVCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAG
CCCCHHHHHHHHHHHHHHHHEEECCCCCCEECCCCCHHHHHCCCHHHHHHHCCCHHHHHH
KRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTLPVIGTIRTYENTRRVERLIA
HHCCCCCCCCCHHHCCCCCCCEEEECCCEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHH
KGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
CCCCEEEEEEEECCCCEEHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCH
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLT
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLAKTHGRIVVEGLDAAGMLRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLV
HHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCEECCCCCCEEE
VADRWFPSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVG
EEECCCCCCCHHHHHHHHHHCCHHHHEECCCCCEECCCCCCCEEEEEECCCCCCHHCHHH
AAVKRGADRKTGPGPAGWP
HHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MMARLKVPEGWCVQAFRFTLNPTQTQAASLARHFGARRKAFNWTVTALKADIKAWRADGT
CCCEECCCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCC
ESAKPSLRVLRKRWNTVKDQVCVNAQTGQVWWPECSKEAYADGIAGAVDAYWNWQSCRAG
CCCCHHHHHHHHHHHHHHHHEEECCCCCCEECCCCCHHHHHCCCHHHHHHHCCCHHHHHH
KRAGKTVGVPRFKKKGRDADRVCFTTGAMRVEPDRRHLTLPVIGTIRTYENTRRVERLIA
HHCCCCCCCCCHHHCCCCCCCEEEECCCEEECCCCCEEEEEEEEEHHHHHHHHHHHHHHH
KGRARVLAITVRRNGTRLDASVRVLVQRPQQRRVALPDSRVGVDVGVRRLATVADAEGTV
CCCCEEEEEEEECCCCEEHHHHHHHHHCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCH
LEQVPNPRPLDAALRGLRRVSRARSRCTKGSRRYCERTTELSRLHRRVNDVRTHHLHVLT
HHHCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TRLAKTHGRIVVEGLDAAGMLRQKGLPGARARRRALSDAALATPRRHLSYKTGWYGSSLV
HHHHHHCCEEEEECCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHCCEECCCCCCEEE
VADRWFPSSKTCHACRHVQDIGWDEIWQCDGCSITHQRDDNAAINLARYEEPPSVVGPVG
EEECCCCCCCHHHHHHHHHHCCHHHHEECCCCCEECCCCCCCEEEEEECCCCCCHHCHHH
AAVKRGADRKTGPGPAGWP
HHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]