Click here to switch to the map view.

The map label for this gene is dedA [C]

Identifier: 121638526

GI number: 121638526

Start: 2928096

End: 2928752

Strand: Direct

Name: dedA [C]

Synonym: BCG_2664

Alternate gene names: 121638526

Gene position: 2928096-2928752 (Clockwise)

Preceding gene: 121638525

Following gene: 121638527

Centisome position: 66.94

GC content: 67.58

Gene sequence:

>657_bases
ATGGATGTGGAGGCCCTGCTGCAGTCGATCCCGCCGCTCATGGTCTACCTGGTGGTCGGCGCGGTGGTAGGGATCGAGAG
CCTGGGCATCCCCCTTCCCGGCGAGATCGTGCTGGTCAGTGCCGCGGTGTTGTCGTCGCACCCCGAGCTGGCCGTCAACC
CGATCGGCGTCGGCGGCGCTGCGGTGATCGGCGCCGTGGTCGGCGATTCGATCGGCTACTCGATCGGCCGCCGCTTCGGC
TTACCGCTATTCGACCGGCTGGGCCGGAGGTTCCCAAAACACTTCGGCCCCGGTCATGTCGCGCTTGCTGAACGGTTGTT
CAACCGATGGGGAGTCCGAGCCGTGTTCCTCGGTCGCTTCATCGCGCTGCTGCGGATATTCGCCGGACCGCTCGCTGGCG
CCCTGAAGATGCCCTACCCGCGCTTCCTGGCCGCCAACGTCACAGGCGGCATCTGCTGGGCCGGCGGCACCACTGCACTG
GTCTACTTCGCCGGGATGGCCGCCCAGCACTGGTTGGAACGGTTCTCCTGGATCGCGCTGGTCATCGCGGTCATCGCCGG
CATTACGGCCGCGATCTTGCTGCGCGAACGCACTTCGCGCGCGATCGCCGAACTCGAGGCCGAGCACTGCCGCAAAGCCG
GTACCACCGCGGCGTGA

Upstream 100 bases:

>100_bases
GCCGCGCGGGTCGTGCGGAACATTGCACCCGACGCGGCGGAATCGGAGTTGAGAAGTACATGGCGGGACGCACCCGGCAC
CGGTCAGGCATTCTTTACCC

Downstream 100 bases:

>100_bases
CCGACCGGCTTGAATCCGGTACCCACGCTCACAGGAGCTGCAATCTAGACAGATCTCCAGTCATGTCATAAAAATGAGAT
CTGAAATTACTTGACAAGCT

Product: putative transmembrane protein dedA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MDVEALLQSIPPLMVYLVVGAVVGIESLGIPLPGEIVLVSAAVLSSHPELAVNPIGVGGAAVIGAVVGDSIGYSIGRRFG
LPLFDRLGRRFPKHFGPGHVALAERLFNRWGVRAVFLGRFIALLRIFAGPLAGALKMPYPRFLAANVTGGICWAGGTTAL
VYFAGMAAQHWLERFSWIALVIAVIAGITAAILLRERTSRAIAELEAEHCRKAGTTAA

Sequences:

>Translated_218_residues
MDVEALLQSIPPLMVYLVVGAVVGIESLGIPLPGEIVLVSAAVLSSHPELAVNPIGVGGAAVIGAVVGDSIGYSIGRRFG
LPLFDRLGRRFPKHFGPGHVALAERLFNRWGVRAVFLGRFIALLRIFAGPLAGALKMPYPRFLAANVTGGICWAGGTTAL
VYFAGMAAQHWLERFSWIALVIAVIAGITAAILLRERTSRAIAELEAEHCRKAGTTAA
>Mature_218_residues
MDVEALLQSIPPLMVYLVVGAVVGIESLGIPLPGEIVLVSAAVLSSHPELAVNPIGVGGAAVIGAVVGDSIGYSIGRRFG
LPLFDRLGRRFPKHFGPGHVALAERLFNRWGVRAVFLGRFIALLRIFAGPLAGALKMPYPRFLAANVTGGICWAGGTTAL
VYFAGMAAQHWLERFSWIALVIAVIAGITAAILLRERTSRAIAELEAEHCRKAGTTAA

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family

Homologues:

Organism=Escherichia coli, GI1788656, Length=137, Percent_Identity=33.5766423357664, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y2637_MYCTU (P63911)

Other databases:

- EMBL:   BX842580
- EMBL:   AE000516
- PIR:   A70964
- RefSeq:   NP_217153.1
- RefSeq:   NP_337215.1
- EnsemblBacteria:   EBMYCT00000000770
- EnsemblBacteria:   EBMYCT00000070885
- GeneID:   888616
- GeneID:   925595
- GenomeReviews:   AE000516_GR
- GenomeReviews:   AL123456_GR
- KEGG:   mtc:MT2715
- KEGG:   mtu:Rv2637
- TIGR:   MT2715
- TubercuList:   Rv2637
- GeneTree:   EBGT00050000017505
- HOGENOM:   HBG657460
- OMA:   RFLTANV
- ProtClustDB:   CLSK791971
- InterPro:   IPR015414

Pfam domain/function: PF09335 SNARE_assoc

EC number: NA

Molecular weight: Translated: 23004; Mature: 23004

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x17a3d334)-; HASH(0x17a0adf0)-; HASH(0x17bf74b8)-; HASH(0x16a18c5c)-;

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVEALLQSIPPLMVYLVVGAVVGIESLGIPLPGEIVLVSAAVLSSHPELAVNPIGVGGA
CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCHH
AVIGAVVGDSIGYSIGRRFGLPLFDRLGRRFPKHFGPGHVALAERLFNRWGVRAVFLGRF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHH
IALLRIFAGPLAGALKMPYPRFLAANVTGGICWAGGTTALVYFAGMAAQHWLERFSWIAL
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VIAVIAGITAAILLRERTSRAIAELEAEHCRKAGTTAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
>Mature Secondary Structure
MDVEALLQSIPPLMVYLVVGAVVGIESLGIPLPGEIVLVSAAVLSSHPELAVNPIGVGGA
CCHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCEECCCCCCHH
AVIGAVVGDSIGYSIGRRFGLPLFDRLGRRFPKHFGPGHVALAERLFNRWGVRAVFLGRF
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHHHHHHHH
IALLRIFAGPLAGALKMPYPRFLAANVTGGICWAGGTTALVYFAGMAAQHWLERFSWIAL
HHHHHHHHHHHHHHHCCCCHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
VIAVIAGITAAILLRERTSRAIAELEAEHCRKAGTTAA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036