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The map label for this gene is ycdM [C]

Identifier: 121637758

GI number: 121637758

Start: 2104142

End: 2105065

Strand: Reverse

Name: ycdM [C]

Synonym: BCG_1891c

Alternate gene names: 121637758

Gene position: 2105065-2104142 (Counterclockwise)

Preceding gene: 121637759

Following gene: 121637757

Centisome position: 48.12

GC content: 63.64

Gene sequence:

>924_bases
GTGACTATTCGGCTGGGTCTACAGATCCCCAACTTCTCCTACGGCACAGGGGTGGAGAAGCTTTTCCCGTCCGTCATCGC
TCAAGCGCGTGAGGCCGAAGCGGCTGGTTACGACTCCCTGTTTGTGATGGACCACTTCTACCAACTGCCCATGTTGGGGA
CGCCCGACCAGCCGATGCTGGAGGCCTACACGGCCCTTGGTGCGCTGGCCACGGCGACCGAGCGGCTGCAACTGGGCGCG
TTGGTGACCGGCAATACCTACCGCAGCCCGACCCTGCTGGCAAAGATCATCACCACGCTCGACGTGGTTAGCGCCGGTCG
AGCGATCCTCGGCATTGGAGCCGGTTGGTTTGAGCTGGAACACCGCCAGCTCGGCTTCGAGTTCGGCACTTTCAGTGACC
GGTTCAACCGGCTCGAAGAGGCGCTACAGATCCTCGAGCCAATGGTCAAGGGTGAGCGCCCAACGTTTTTCGGCGATTGG
TACACCACCGAATCGGCGATGGCCGAGCCGCGGTATCGCGACCGCATCCCAATCTTGATCGGCGGCGGTGGTGAGAAAAA
GACATTCGCGATCGCCGCCCGCTTTGCCGACCATCTCAACATCGTGGCGGCGGTCGACGAGCTGCCGCGCAAGATGCGGG
CGCTGGCCGCGCGGTGCGACGAGGCCGGCCGGGACCGGTCGACGCTTCAGACCAGCCTGCTGTTGACGGTGATGATCGAC
GAGACACTCTCGCCAGATGCGATTCCCGCGGAGATGAGCGGTCGCGTGGTGGTGGGCAGCCCGGCACAGATCGCCGACCA
AATTCAGGCCAAGGTGCTCGATGCCGGTGTCGACGGATTAATCATCAACTTGGCTCCGCACGGCTATCTGCCCGGGGTCA
TCACCACCGCCGCTGAAGCGCTGCGCCCGCTGCTGGGTGTGTAG

Upstream 100 bases:

>100_bases
CTCGCCACATCACCGGCCAGACGCTGCACGTCAGCCACGGCGCGCTGGCTCACTTCGGCTGAACCTTTCGCTTCACCGGC
CGATCGCTACGGTAGGTAGT

Downstream 100 bases:

>100_bases
CCACCGGGGCCGGTGACGCAGGCACGCTGTGGTGTGGCTGATGACACATGTCCTCAACTGGGCCTGCAGCGGTCGGGTTG
ACTACCGTAGTAGCTAACTG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTIRLGLQIPNFSYGTGVEKLFPSVIAQAREAEAAGYDSLFVMDHFYQLPMLGTPDQPMLEAYTALGALATATERLQLGA
LVTGNTYRSPTLLAKIITTLDVVSAGRAILGIGAGWFELEHRQLGFEFGTFSDRFNRLEEALQILEPMVKGERPTFFGDW
YTTESAMAEPRYRDRIPILIGGGGEKKTFAIAARFADHLNIVAAVDELPRKMRALAARCDEAGRDRSTLQTSLLLTVMID
ETLSPDAIPAEMSGRVVVGSPAQIADQIQAKVLDAGVDGLIINLAPHGYLPGVITTAAEALRPLLGV

Sequences:

>Translated_307_residues
MTIRLGLQIPNFSYGTGVEKLFPSVIAQAREAEAAGYDSLFVMDHFYQLPMLGTPDQPMLEAYTALGALATATERLQLGA
LVTGNTYRSPTLLAKIITTLDVVSAGRAILGIGAGWFELEHRQLGFEFGTFSDRFNRLEEALQILEPMVKGERPTFFGDW
YTTESAMAEPRYRDRIPILIGGGGEKKTFAIAARFADHLNIVAAVDELPRKMRALAARCDEAGRDRSTLQTSLLLTVMID
ETLSPDAIPAEMSGRVVVGSPAQIADQIQAKVLDAGVDGLIINLAPHGYLPGVITTAAEALRPLLGV
>Mature_306_residues
TIRLGLQIPNFSYGTGVEKLFPSVIAQAREAEAAGYDSLFVMDHFYQLPMLGTPDQPMLEAYTALGALATATERLQLGAL
VTGNTYRSPTLLAKIITTLDVVSAGRAILGIGAGWFELEHRQLGFEFGTFSDRFNRLEEALQILEPMVKGERPTFFGDWY
TTESAMAEPRYRDRIPILIGGGGEKKTFAIAARFADHLNIVAAVDELPRKMRALAARCDEAGRDRSTLQTSLLLTVMIDE
TLSPDAIPAEMSGRVVVGSPAQIADQIQAKVLDAGVDGLIINLAPHGYLPGVITTAAEALRPLLGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=190, Percent_Identity=29.4736842105263, Blast_Score=71, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 33221; Mature: 33090

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: PS00217 SUGAR_TRANSPORT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIRLGLQIPNFSYGTGVEKLFPSVIAQAREAEAAGYDSLFVMDHFYQLPMLGTPDQPML
CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
EAYTALGALATATERLQLGALVTGNTYRSPTLLAKIITTLDVVSAGRAILGIGAGWFELE
HHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEH
HRQLGFEFGTFSDRFNRLEEALQILEPMVKGERPTFFGDWYTTESAMAEPRYRDRIPILI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHCCCHHHCCCCEEE
GGGGEKKTFAIAARFADHLNIVAAVDELPRKMRALAARCDEAGRDRSTLQTSLLLTVMID
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEC
ETLSPDAIPAEMSGRVVVGSPAQIADQIQAKVLDAGVDGLIINLAPHGYLPGVITTAAEA
CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
LRPLLGV
HHHHHCC
>Mature Secondary Structure 
TIRLGLQIPNFSYGTGVEKLFPSVIAQAREAEAAGYDSLFVMDHFYQLPMLGTPDQPML
EEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCHHH
EAYTALGALATATERLQLGALVTGNTYRSPTLLAKIITTLDVVSAGRAILGIGAGWFELE
HHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEH
HRQLGFEFGTFSDRFNRLEEALQILEPMVKGERPTFFGDWYTTESAMAEPRYRDRIPILI
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCHHHHCCCHHHCCCCEEE
GGGGEKKTFAIAARFADHLNIVAAVDELPRKMRALAARCDEAGRDRSTLQTSLLLTVMID
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEC
ETLSPDAIPAEMSGRVVVGSPAQIADQIQAKVLDAGVDGLIINLAPHGYLPGVITTAAEA
CCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHH
LRPLLGV
HHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]