Click here to switch to the map view.

The map label for this gene is ycdM [C]

Identifier: 121636878

GI number: 121636878

Start: 1094591

End: 1095439

Strand: Reverse

Name: ycdM [C]

Synonym: BCG_1007c

Alternate gene names: 121636878

Gene position: 1095439-1094591 (Counterclockwise)

Preceding gene: 121636888

Following gene: 121636875

Centisome position: 25.04

GC content: 66.55

Gene sequence:

>849_bases
ATGCACTACGGACTTGTGCTGTTCACCAGCGACCGCGGCATCACCCCGGCCGCGGCCGCCAGACTTGCTGAAAGCCACGG
GTTTCGCACGTTTTACGTGCCCGAACACACCCACATCCCGGTCAAGCGCCAGGCGGCCCATCCGACGGCGGGTGACGCTT
CGCTGCCGGACGACCGCTATATGCGCACGTTGGACCCGTGGGTGAGCCTGGGAGCAGCATCGGCGGTGACGTCGCGGATC
CGGCTTGCCACCGCGGTGGCGCTGCCGGTCGAGCATGATCCGATCACGCTGGCGAAAAGCATTGCGACGCTGGATCATTT
GTCGCACGGCCGGGTCAGCGTCGGGGTCGGGTTCGGCTGGAACACCGACGAGCTCGTCGATCATGGTGTGCCACCCGGAC
GCCGCCGCACCATGCTGCGCGAATACCTCGAGGCGATGCGGGCGTTGTGGACCCAAGAGGAGGCCTGCTATGACGGCGAG
TTCGTCAAGTTCGGACCTAGCTGGGCCTGGCCCAAGCCGGTGCAGCCGCACATCCCGGTGCTGGTAGGCGCTGCGGGGAC
GGAGAAGAACTTCAAGTGGATCGCGCGCAGCGCCGACGGCTGGATCACCACTCCACGCGACGTCGACATCGACGAGCCGG
TGAAGTTACTGCAAGACATCTGGGCGGCCGCCGGCCGCGACGGGCTTCCACAGATCGTGGCCCTGGACGTCAAACCGGTG
CCCGACAAGCTGGCGCGCTGGGCCGAGCTTGGCGTTACGGAGGTGCTGTTCGGTATGCCGGACAGGTCTGCAGACGACGC
AGCCGCGTACGTGGAGCGGCTGGCCGCCAAGTTGGCCTGTTGCGTATAG

Upstream 100 bases:

>100_bases
CGCACGTTCGGGTGCCGCTGCCGGAGCGACCGGCGCTCGCGACATTAACGACTGGACGGCCGCTTGCCCGGCGCAGGTGG
AACACGTTCTAATTCGGTGC

Downstream 100 bases:

>100_bases
GGCGAGCAGACGCATAAGCCCCCGACACGCCGAGCGTGCGGGGGCTTATGCGTCTGCTCGCCCTAGAGACTGAGCAAGAT
CTCCCGGGCCAGCGCCGCGG

Product: putative oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTAGDASLPDDRYMRTLDPWVSLGAASAVTSRI
RLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGE
FVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV

Sequences:

>Translated_282_residues
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTAGDASLPDDRYMRTLDPWVSLGAASAVTSRI
RLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGE
FVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
>Mature_282_residues
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTAGDASLPDDRYMRTLDPWVSLGAASAVTSRI
RLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGWNTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGE
FVKFGPSWAWPKPVQPHIPVLVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To M.tuberculosis Rv2161c and Rv3079c [H]

Homologues:

Organism=Escherichia coli, GI1787247, Length=144, Percent_Identity=32.6388888888889, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019921
- InterPro:   IPR011251
- InterPro:   IPR016048 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 30883; Mature: 30883

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTAGDASLPDDRY
CCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCCHHH
MRTLDPWVSLGAASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
NTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGEFVKFGPSWAWPKPVQPHIPV
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCE
LVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
EEECCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
HHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHYGLVLFTSDRGITPAAAARLAESHGFRTFYVPEHTHIPVKRQAAHPTAGDASLPDDRY
CCEEEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCHHCCCCCCCCCCCCCCHHH
MRTLDPWVSLGAASAVTSRIRLATAVALPVEHDPITLAKSIATLDHLSHGRVSVGVGFGW
HHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCC
NTDELVDHGVPPGRRRTMLREYLEAMRALWTQEEACYDGEFVKFGPSWAWPKPVQPHIPV
CHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEEEECCCCCCCCCCCCCCCE
LVGAAGTEKNFKWIARSADGWITTPRDVDIDEPVKLLQDIWAAAGRDGLPQIVALDVKPV
EEECCCCCCCCEEEEECCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
PDKLARWAELGVTEVLFGMPDRSADDAAAYVERLAAKLACCV
HHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]