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The map label for this gene is sigL [H]

Identifier: 121636657

GI number: 121636657

Start: 859006

End: 859539

Strand: Direct

Name: sigL [H]

Synonym: BCG_0785

Alternate gene names: 121636657

Gene position: 859006-859539 (Clockwise)

Preceding gene: 121636656

Following gene: 121636658

Centisome position: 19.64

GC content: 66.48

Gene sequence:

>534_bases
GTGGCTCGTGTGTCGGGCGCCGCGGCCGCTGAAGCCGCGTTGATGAGGGCGCTCTACGACGAGCATGCCGCCGTGTTGTG
GCGTTACGCGCTGCGCTTGACCGGGGATGCGGCCCAAGCCGAAGACGTCGTCCAAGAGACGCTGTTGCGGGCGTGGCAGC
ATCCGGAGGTGATCGGCGACACCGCGCGGCCGGCAAGGGCGTGGTTGTTCACCGTCGCGCGCAACATGATCATCGACGAG
CGGCGCAGCGCCCGGTTCCGCAATGTGGTCGGTTCGACCGACCAATCGGGCACACCCGAGCAGTCGACGCCGGACGAGGT
GAACGCCGCACTGGATCGGCTGCTGATCGCCGATGCGCTGGCCCAACTGTCCGCCGAGCATAGGGCCGTGATCCAGCGGT
CCTACTACCGCGGATGGTCGACCGCACAGATTGCCACCGACCTCGGAATTGCCGAAGGAACGGTGAAGTCGCGATTGCAC
TACGCCGTGCGCGCGTTGCGGCTCACTCTGCAGGAACTGGGAGTTACTCGATGA

Upstream 100 bases:

>100_bases
CGGGCCCCGAATTCTGACGCTCGGTTAGCGCGGCTGCCGGCGCGGGCAGTGGTGAACCAAACTCTTACTCGACTCGTGTC
AGTAAGCGGGAGGTGATCGC

Downstream 100 bases:

>100_bases
CGGCAGAGCCCATTCGCATGGCTGCCGGCTCCGGATACGTGAGGGTGACAGGAGAGAGATGACATGACGATGCCGCTACG
AGGACTTGGCCCGCCCGATG

Product: RNA polymerase sigma factor SigL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 176

Protein sequence:

>177_residues
MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMIIDE
RRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH
YAVRALRLTLQELGVTR

Sequences:

>Translated_177_residues
MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMIIDE
RRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLH
YAVRALRLTLQELGVTR
>Mature_176_residues
ARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGDTARPARAWLFTVARNMIIDER
RSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHY
AVRALRLTLQELGVTR

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes for the light induced biosynthesis of carotenoids [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR007630
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 19538; Mature: 19407

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: PS01063 SIGMA70_ECF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCC
TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ARVSGAAAAEAALMRALYDEHAAVLWRYALRLTGDAAQAEDVVQETLLRAWQHPEVIGD
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHCC
TARPARAWLFTVARNMIIDERRSARFRNVVGSTDQSGTPEQSTPDEVNAALDRLLIADAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
AQLSAEHRAVIQRSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELGVTR
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7934835; 8052622 [H]