Click here to switch to the map view.

The map label for this gene is jag [H]

Identifier: 121635906

GI number: 121635906

Start: 26469

End: 27032

Strand: Reverse

Name: jag [H]

Synonym: BCG_0026c

Alternate gene names: 121635906

Gene position: 27032-26469 (Counterclockwise)

Preceding gene: 121635907

Following gene: 121635905

Centisome position: 0.62

GC content: 64.01

Gene sequence:

>564_bases
ATGGCCGACGCTGACACCACCGACTTCGACGTCGACGCAGAAGCACCGGGTGGAGGCGTCCGGGAGGACACGGCGACGGA
TGCTGACGAGGCCGACGATCAAGAAGAGAGATTGGTCGCCGAGGGCGAGATTGCAGGCGACTACCTGGAAGAGTTATTGG
ACGTGTTGGACTTCGATGGCGACATCGACCTCGATGTCGAAGGCAATCGTGCGGTGGTGAGCATCGACGGCAGTGACGAC
CTGAACAAGTTGGTCGGGCGCGGGGGCGAGGTGCTCGACGCTCTGCAGGAACTCACCCGGTTGGCGGTGCATCAGAAGAC
CGGTGTGTGGAGCCGGTTGATGCTAGACATCGCGAGGTGGCGACGGCGGCGCCGGGAGGAATTGGCGGCGCTGGCCGACG
AGGTGGCGCGGCGAGTGGCCGAAACCGGTGACCGCGAGGAACTCGTTCCAATGACGCCGTTCGAACGGAAGATCGTCCAC
GATGCGGTTGCAGCGGTGCCAGGTGTGCACAGCGAAAGCGAAGGCGTGGAGCCAGAACGCCGAGTCGTTGTGCTCCGCGA
CTAG

Upstream 100 bases:

>100_bases
GGGTGCGACCGAAAAAACGCAAACGTTGACAATCCTTCCGGGCAGCCGGGCAGGCGGTCCCACAAACACAACCCACCCGC
AGACGAGGGGAGAGCAAGCC

Downstream 100 bases:

>100_bases
CTCGCGAGCCAGCGGCTCCGACCGACGCCGCAGTAAGCGATGCGTGGCCGAGCGGCTGGGCCAGCGTCTCGAGAGCGGAG
AATGTTTCACGTGAAACATG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDD
LNKLVGRGGEVLDALQELTRLAVHQKTGVWSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVH
DAVAAVPGVHSESEGVEPERRVVVLRD

Sequences:

>Translated_187_residues
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDD
LNKLVGRGGEVLDALQELTRLAVHQKTGVWSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVH
DAVAAVPGVHSESEGVEPERRVVVLRD
>Mature_186_residues
ADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDGDIDLDVEGNRAVVSIDGSDDL
NKLVGRGGEVLDALQELTRLAVHQKTGVWSRLMLDIARWRRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHD
AVAAVPGVHSESEGVEPERRVVVLRD

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 20589; Mature: 20458

Theoretical pI: Translated: 4.02; Mature: 4.02

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVWSRLMLDIARW
CEEEEECCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
RVVVLRD
CEEEECC
>Mature Secondary Structure 
ADADTTDFDVDAEAPGGGVREDTATDADEADDQEERLVAEGEIAGDYLEELLDVLDFDG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
DIDLDVEGNRAVVSIDGSDDLNKLVGRGGEVLDALQELTRLAVHQKTGVWSRLMLDIARW
CEEEEECCCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
RRRRREELAALADEVARRVAETGDREELVPMTPFERKIVHDAVAAVPGVHSESEGVEPER
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
RVVVLRD
CEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]